Detailed information NTG0155279

Bioinformatically predicted

Overview

• Name: clpC
• Type: Regulator
• Locus tag: A8713_RS16725
• Genome accession: NZ_CP015849
• Coordinates: 3864766..3867363 (+)
• Length: 865 a.a.
• NCBI ID: WP_064534305.1
• Uniprot ID: -
• Organism: Streptomyces sp. SAT1
• Function: degradation of ComK; degradation of DegU (predicted from homology) Competence regulation

Genomic Context

Location: 3859766..3872363

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
A8713_RS34730 (A8713_16690)	-	3860524..3861456 (+)	933	WP_261340618.1	helix-turn-helix transcriptional regulator	-
A8713_RS16705 (A8713_16695)	-	3861410..3862411 (-)	1002	WP_064534303.1	helix-turn-helix transcriptional regulator	-
A8713_RS16710 (A8713_16700)	-	3862432..3863442 (-)	1011	WP_173860860.1	helix-turn-helix transcriptional regulator	-
A8713_RS16715 (A8713_16705)	-	3863734..3864069 (+)	336	WP_026252727.1	hypothetical protein	-
A8713_RS16720 (A8713_16710)	-	3864228..3864647 (-)	420	WP_064534304.1	TIGR03618 family F420-dependent PPOX class oxidoreductase	-
A8713_RS16725 (A8713_16715)	clpC	3864766..3867363 (+)	2598	WP_064534305.1	ATP-dependent chaperone ClpB	Regulator
A8713_RS16730 (A8713_16720)	-	3867418..3867972 (-)	555	WP_079159005.1	hypothetical protein	-
A8713_RS16735 (A8713_16725)	-	3868111..3868647 (+)	537	WP_064534306.1	YbjN domain-containing protein	-
A8713_RS16740 (A8713_16730)	-	3868813..3870003 (-)	1191	WP_064534307.1	pyridoxal phosphate-dependent aminotransferase	-
A8713_RS16745 (A8713_16735)	-	3870830..3871357 (+)	528	WP_018569013.1	DUF2617 family protein	-

Sequence

Protein

• Length: 865 a.a.
• Molecular weight: 94629.18 Da
• Isoelectric Point: 4.7507

>NTDB_id=155279 A8713_RS16725 WP_064534305.1 3864766..3867363(+) (clpC) [Streptomyces sp. SAT1]
MDAELTNRSRDAIQAAGNRAVTGGNPDLTPAHLLLALLEGKDNENIIDLLSAVDADQASVRAGAERVLASLPSVTGSTVA
PPQPNRELLAVIADAQNRARDLGDDYLSTEHLLLGIAAKGGAAGEVLTGQGASAKKLQEAFQKARGGRRVTTPDPEGQYK
ALEKFGTDFTAAAREGKLDPVIGRDQEIRRVVQVLSRRTKNNPVLIGEPGVGKTAVVEGLAQRIVKGDVPESLKDKRLVS
LDLGAMVAGAKYRGEFEERLKTVLAEIKDSDGQIITFIDELHTVVGAGAGGDSAMDAGNMLKPMLARGELRMVGATTLDE
YRERIEKDPALERRFQQVLVAEPSVEDSIAILRGLKGRYEAHHKVQINDSALVAAATLSDRYITSRFLPDKAIDLVDEAA
SRLRMEIDSSPVEIDELQRAVDRLRMEELALDKETDAASRERLEKLRRDLADKEEELRGLTARWEKEKQSLNRVGELKEK
LDDLRGQAERAQRDGDFDTASKLLYAEIPELEKELEAASRAEEEAAKDTMVKEEVGPDDIADVVASWTGIPAGRLLEGET
QKLLRMEDEIGRRLIGQGEAVRAVSDAVRRSRAGIADPDRPTGSFLFLGPTGVGKTELAKALADFLFDDERAMVRIDMSE
YSEKHSVARLVGAPPGYVGYEEGGQLTEAVRRRPYSVVLLDEVEKAHPEVFDILLQVLDDGRLTDGQGRTVDFRNVILVL
TSNLGSQFLVDPVTSEAEKKEQVLEVVRTSFKPEFLNRLDDLVVFSALTKEELSRIAKLAIDRLAKRLAERRLTLDVTPE
ALTWLADEGMDPAYGARPLRRLVQTAIGDRLAREILSGEIKDGDTVRVDRFGEGLLVGPATGKTL

Nucleotide

• Length: 2598 bp

>NTDB_id=155279 A8713_RS16725 WP_064534305.1 3864766..3867363(+) (clpC) [Streptomyces sp. SAT1]
GTGGACGCCGAGCTGACCAACAGGAGCCGGGACGCCATTCAGGCGGCCGGGAACCGGGCCGTGACCGGGGGAAACCCGGA
TCTGACCCCTGCCCACCTGCTGCTCGCGCTGCTGGAGGGCAAGGACAACGAGAACATCATCGACCTGTTGTCGGCCGTCG
ACGCCGACCAGGCGTCGGTCCGCGCGGGCGCCGAGCGGGTGCTCGCGTCGCTGCCCAGTGTGACCGGGTCCACCGTCGCG
CCGCCGCAGCCGAACCGCGAGCTGCTGGCCGTGATCGCGGACGCGCAGAACCGGGCGCGGGACCTGGGCGACGACTACCT
GTCCACCGAGCACCTGCTGCTCGGCATCGCCGCGAAGGGCGGCGCGGCCGGCGAGGTGCTCACCGGGCAGGGCGCGAGTG
CGAAGAAACTGCAAGAGGCGTTCCAGAAGGCGAGGGGAGGGCGCCGGGTGACCACACCCGACCCCGAGGGCCAGTACAAG
GCCCTGGAGAAGTTCGGCACCGACTTCACGGCGGCGGCCCGCGAGGGCAAGCTGGACCCGGTCATCGGCCGGGACCAGGA
GATCCGCCGGGTCGTCCAGGTGCTGTCACGGCGTACGAAGAACAACCCGGTCCTCATCGGTGAGCCCGGCGTCGGCAAGA
CCGCCGTCGTGGAGGGGCTCGCCCAGCGGATCGTCAAGGGTGACGTGCCCGAGTCCCTGAAGGACAAGCGGCTGGTCTCC
CTGGACCTCGGGGCGATGGTCGCGGGCGCGAAGTACCGAGGCGAGTTCGAGGAGCGGCTGAAGACGGTCCTGGCCGAGAT
CAAGGACTCCGACGGCCAGATCATCACCTTCATCGACGAGCTGCACACCGTCGTCGGCGCGGGCGCCGGCGGCGACTCCG
CGATGGACGCGGGCAACATGCTCAAGCCGATGCTGGCCCGCGGCGAGCTGCGCATGGTCGGCGCGACCACGCTCGACGAG
TACCGCGAGCGGATCGAGAAGGACCCGGCCCTGGAGCGCCGCTTCCAGCAGGTGCTGGTCGCCGAGCCCAGCGTCGAGGA
CTCCATCGCCATCCTGCGCGGGCTCAAGGGCCGCTACGAGGCCCACCACAAGGTGCAGATCAACGACTCGGCGCTGGTGG
CAGCCGCGACCCTGTCCGACCGGTACATCACCTCCCGCTTCCTGCCCGACAAGGCCATCGACCTGGTCGACGAGGCCGCC
TCCCGGCTCCGTATGGAGATCGACTCCTCGCCGGTCGAGATCGACGAGCTCCAGCGCGCCGTCGACCGGCTGCGGATGGA
GGAGCTGGCGCTCGACAAGGAGACCGACGCGGCCTCCCGCGAGCGGCTGGAGAAGCTGCGCCGCGACCTCGCCGACAAGG
AGGAGGAGCTGCGCGGCCTGACCGCCCGCTGGGAGAAGGAGAAGCAGTCCCTCAACCGGGTCGGTGAGCTGAAGGAGAAG
CTGGACGACCTGCGCGGGCAGGCCGAGCGCGCCCAGCGCGACGGCGACTTCGACACCGCCTCCAAGCTGCTGTACGCCGA
GATCCCGGAGCTGGAGAAGGAACTGGAGGCCGCCTCGCGCGCCGAGGAGGAGGCCGCCAAGGACACCATGGTCAAGGAGG
AGGTCGGCCCCGACGACATCGCCGACGTGGTCGCCTCCTGGACCGGTATCCCGGCCGGCCGGCTGCTGGAGGGCGAGACC
CAGAAGCTGCTGCGCATGGAGGACGAGATCGGCAGGCGGCTGATCGGTCAGGGCGAGGCCGTGCGCGCCGTCTCCGACGC
GGTGCGGCGCAGCCGCGCGGGCATCGCGGACCCGGACCGGCCCACCGGCTCGTTCCTCTTCCTCGGCCCCACCGGCGTCG
GCAAGACCGAGCTGGCCAAGGCGCTGGCGGACTTCCTCTTCGACGACGAGCGGGCCATGGTCCGCATCGACATGTCGGAG
TACAGCGAGAAGCACAGCGTGGCCCGGCTGGTCGGCGCCCCGCCCGGATACGTGGGGTACGAGGAGGGCGGCCAGCTCAC
CGAGGCGGTACGGCGCCGCCCGTACAGCGTGGTCCTGCTGGACGAGGTGGAGAAGGCGCACCCGGAGGTCTTCGACATCC
TGCTCCAGGTGCTCGACGACGGGCGGCTCACCGACGGCCAGGGCCGCACGGTCGACTTCCGCAACGTCATCCTGGTGCTG
ACCTCCAACCTGGGCAGCCAGTTCCTGGTCGACCCGGTCACCAGCGAGGCGGAGAAGAAGGAACAGGTCCTGGAGGTGGT
CCGGACCTCCTTCAAGCCGGAGTTCCTCAACCGCCTGGACGACCTCGTGGTCTTCTCCGCGCTGACCAAGGAGGAGCTGA
GCCGGATCGCGAAGCTGGCCATCGACCGGCTGGCCAAGCGGCTGGCGGAGCGGCGCCTGACGCTCGACGTCACGCCCGAG
GCCCTGACCTGGCTCGCCGACGAGGGCATGGACCCGGCCTACGGTGCCCGGCCGCTGCGCCGCCTGGTGCAGACCGCCAT
CGGCGACCGGCTGGCCCGGGAGATCCTGTCCGGCGAGATCAAGGACGGCGACACGGTCCGGGTGGACCGGTTCGGCGAGG
GGCTGCTGGTGGGACCGGCGACGGGCAAGACGCTGTAG

Domains

Predicted by InterProScan.

• Clp amino terminal domain, pathogenicity island component (Clp_N) (24-68)

• Clp amino terminal domain, pathogenicity island component (Clp_N) (95-146)

• AAA domain (Cdc48 subfamily) (AAA_2) (600-761)

• C-terminal, D2-small domain, of ClpB protein (ClpB_D2-small) (768-848)

• ATPase family associated with various cellular activities (AAA) (AAA) (204-338)

• AAA lid domain (AAA_lid_9) (344-446)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
clpC	Bacillus subtilis subsp. subtilis str. 168	45.928	100	0.469
clpC	Lactococcus lactis subsp. lactis strain DGCC12653	43.864	88.555	0.388
clpC	Lactococcus lactis subsp. cremoris KW2	45.098	82.543	0.372
clpE	Streptococcus mutans UA159	47.033	77.919	0.366