Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   AM277_RS22440 Genome accession   NZ_CP012561
Coordinates   4308153..4308749 (-) Length   198 a.a.
NCBI ID   WP_004150836.1    Uniprot ID   A0A0H3GL50
Organism   Klebsiella pneumoniae strain UCLAOXA232KP     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 4303153..4313749
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AM277_RS22425 (AM277_21550) helD 4303361..4305415 (-) 2055 WP_023342915.1 DNA helicase IV -
  AM277_RS22430 (AM277_21555) - 4305540..4305986 (+) 447 WP_002898425.1 YccF domain-containing protein -
  AM277_RS22435 (AM277_21560) yccS 4306004..4308139 (+) 2136 WP_002898422.1 YccS family putative transporter -
  AM277_RS22440 (AM277_21565) sxy/tfoX 4308153..4308749 (-) 597 WP_004150836.1 TfoX/Sxy family DNA transformation protein Regulator
  AM277_RS22450 (AM277_21570) sulA 4309098..4309607 (+) 510 WP_002898418.1 SOS-induced cell division inhibitor SulA -
  AM277_RS22455 (AM277_21575) ompA 4309960..4311030 (+) 1071 WP_002898408.1 porin OmpA -
  AM277_RS22460 (AM277_21580) matP 4311162..4311614 (-) 453 WP_002898404.1 macrodomain Ter protein MatP -
  AM277_RS22465 (AM277_21585) - 4311800..4313557 (+) 1758 WP_032414743.1 AAA family ATPase -

Sequence

Protein


Download         Length: 198 a.a.        Molecular weight: 22576.15 Da        Isoelectric Point: 10.1298

>NTDB_id=155229 AM277_RS22440 WP_004150836.1 4308153..4308749(-) (sxy/tfoX) [Klebsiella pneumoniae strain UCLAOXA232KP]
MRKLVCPRLPQFQACVSPLGQLHTRPLFGGYSLAIDDTVFAMVAEGNIYLKACEQSAAYRVEHRNPLLTLRRHGRIVPLK
YYQIDDTLWRDEQQLFRLSLLSWQSAQREKNYRRASGRLKDLPNISFHMELQLIHAGIPDVRTLREVGAQEAWLRLRVNN
ASLSLSVLLALEGAIAGVHAAALPTPRRQELLEWAATR

Nucleotide


Download         Length: 597 bp        

>NTDB_id=155229 AM277_RS22440 WP_004150836.1 4308153..4308749(-) (sxy/tfoX) [Klebsiella pneumoniae strain UCLAOXA232KP]
ATGAGAAAACTAGTTTGTCCGCGGCTCCCGCAATTTCAGGCCTGCGTCTCACCGCTGGGTCAACTGCATACTCGTCCGCT
CTTTGGCGGCTACAGCCTGGCTATTGATGATACGGTGTTTGCGATGGTGGCCGAGGGGAACATTTATCTGAAGGCCTGCG
AGCAGAGCGCTGCTTATCGGGTGGAACATCGTAATCCTCTGTTAACGCTGCGCCGACACGGCCGCATAGTGCCGCTGAAG
TATTATCAAATTGACGACACTTTATGGCGCGATGAGCAGCAGCTTTTTCGGCTATCGCTACTGTCGTGGCAGAGTGCGCA
GCGCGAAAAGAACTACCGACGGGCGTCGGGCCGCCTGAAGGATTTACCTAATATCAGCTTTCATATGGAATTGCAGCTGA
TTCACGCGGGCATACCGGACGTTAGGACGTTGCGGGAAGTTGGTGCGCAGGAGGCATGGTTGAGGCTACGCGTAAATAAT
GCTTCTTTATCGCTGAGCGTATTGCTGGCGCTGGAGGGGGCGATTGCCGGGGTACATGCCGCCGCGCTCCCGACGCCACG
GCGTCAGGAGCTTCTCGAATGGGCGGCTACCCGGTAG

Domains

Predicted by InterproScan.

TfoX C-terminal domain (TfoX_C)

(117-194)

TfoX N-terminal domain (TfoX_N)

(16-105)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0H3GL50

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

51.269

99.495

0.51

Multiple sequence alignment