Detailed information    

insolico Bioinformatically predicted

Overview

Name   sbcB   Type   Machinery gene
Locus tag   A8V30_RS15920 Genome accession   NZ_CP015846
Coordinates   2847560..2848984 (+) Length   474 a.a.
NCBI ID   WP_000132546.1    Uniprot ID   -
Organism   Escherichia coli O157:H7 strain FRIK2069     
Function   promote homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2842560..2853984
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  A8V30_RS31420 - 2842890..2843068 (+) 179 Protein_2923 hypothetical protein -
  A8V30_RS31755 - 2843402..2843758 (+) 357 Protein_2924 hypothetical protein -
  A8V30_RS15890 (A8V30_15040) - 2843755..2844105 (+) 351 WP_000610373.1 DUF551 domain-containing protein -
  A8V30_RS15895 (A8V30_15045) - 2844293..2844637 (+) 345 WP_001281188.1 hypothetical protein -
  A8V30_RS15900 (A8V30_15050) - 2844715..2844906 (+) 192 WP_000132739.1 helix-turn-helix transcriptional regulator -
  A8V30_RS15905 (A8V30_15055) - 2844887..2845843 (-) 957 Protein_2928 tyrosine-type recombinase/integrase -
  A8V30_RS15915 (A8V30_31140) - 2847154..2847378 (-) 225 Protein_2930 Arm DNA-binding domain-containing protein -
  A8V30_RS15920 (A8V30_15070) sbcB 2847560..2848984 (+) 1425 WP_000132546.1 exodeoxyribonuclease I Machinery gene
  A8V30_RS15925 (A8V30_15075) tsuB 2849027..2849254 (-) 228 WP_000985273.1 thiosulfate utilization sulfurtransferase TsuB/YeeD -
  A8V30_RS15930 (A8V30_15080) tsuA 2849268..2850326 (-) 1059 WP_000492327.1 thiosulfate utilization transporter TsuA/YeeE -
  A8V30_RS15935 (A8V30_15085) plaP 2850505..2851863 (-) 1359 WP_000019197.1 putrescine/proton symporter PlaP -
  A8V30_RS31425 yoeI 2851853..2851915 (-) 63 WP_010723108.1 membrane protein YoeI -
  A8V30_RS15940 (A8V30_15090) yeeY 2852130..2853059 (-) 930 WP_000803334.1 LysR substrate-binding domain-containing protein -
  A8V30_RS15945 (A8V30_15095) yeeZ 2853105..2853929 (-) 825 WP_000754765.1 SDR family oxidoreductase -

Sequence

Protein


Download         Length: 474 a.a.        Molecular weight: 54397.63 Da        Isoelectric Point: 5.2440

>NTDB_id=155194 A8V30_RS15920 WP_000132546.1 2847560..2848984(+) (sbcB) [Escherichia coli O157:H7 strain FRIK2069]
MTDTDKQPTFLFHDYETFGTHPALDRPAQFAAIRTDDEFNVIGEPEVFYCKPADDYLPQPGAVLITGITPQEARAKGENE
AAFAARIHSLFTVPKTCILGYNNVRFDDEVTRNVFYRNFYDPYAWSWQHDNSRWDLLDVMRACYALRPEGINWPENDDGL
PSFRLEHLTKANGIEHSNAHDAMADVYATIAMAKLVKTRQPRLFDYLFTHRNKHKLMALIDVPQMKPLVHVSGMFGAWRG
NTSWVAPLAWHPENRNAVIMVDLAGDISPLLELDSDTLRERLYTAKTDLGDNAAVPVKLVHINKCPVLAQANTLRPEDAD
RLGINRQHCLDNLKILRENPQVREKVVAIFAEAEPFTPSDNVDAQLYNGFFSDADRAAMKIVLETEPRNLPALDITFVDK
RIEKLLFNYRARNFPGTLDYAEQQRWLEHRRQVFTPEFLQGYAEEIQMLAQQYADDKEKVALLKALWQYAEEIV

Nucleotide


Download         Length: 1425 bp        

>NTDB_id=155194 A8V30_RS15920 WP_000132546.1 2847560..2848984(+) (sbcB) [Escherichia coli O157:H7 strain FRIK2069]
ATGACAGACACAGATAAGCAACCTACCTTCCTCTTTCACGATTACGAAACCTTTGGCACGCACCCCGCGTTAGATCGCCC
TGCACAGTTCGCAGCCATTCGCACCGATGACGAATTCAATGTCATCGGCGAACCCGAAGTCTTTTACTGCAAGCCCGCGG
ATGACTATTTACCCCAGCCTGGAGCAGTATTAATTACCGGTATTACCCCGCAGGAAGCTCGGGCGAAAGGAGAAAACGAA
GCCGCATTTGCCGCCCGTATTCACTCGCTTTTTACCGTACCGAAGACCTGTATTCTGGGCTACAACAATGTGCGTTTCGA
CGACGAAGTCACACGCAACGTTTTTTATCGTAATTTCTACGATCCTTACGCCTGGAGCTGGCAGCATGATAACTCGCGCT
GGGATTTACTGGATGTTATGCGTGCCTGCTATGCCCTGCGCCCGGAAGGAATAAACTGGCCTGAAAATGATGACGGTCTA
CCGAGCTTTCGCCTTGAGCATTTAACCAAAGCGAATGGTATTGAACATAGCAACGCCCACGATGCGATGGCTGATGTGTA
CGCCACTATTGCGATGGCGAAACTGGTAAAAACGCGTCAACCACGCCTGTTTGATTATCTCTTTACCCATCGTAATAAAC
ACAAACTGATGGCGTTGATTGATGTTCCGCAGATGAAACCCCTGGTTCACGTTTCCGGAATGTTTGGGGCATGGCGCGGC
AATACCAGCTGGGTGGCACCGCTGGCGTGGCATCCTGAAAATCGCAATGCCGTAATTATGGTGGATTTGGCAGGAGATAT
TTCGCCATTACTGGAACTGGATAGCGACACATTGCGCGAGCGTTTATATACCGCAAAAACCGATCTTGGCGATAACGCCG
CCGTTCCGGTTAAACTGGTACATATCAATAAATGTCCGGTGCTGGCCCAGGCGAATACGCTACGCCCGGAAGATGCCGAC
CGACTGGGAATTAATCGTCAGCATTGCCTCGATAACCTGAAAATTCTGCGTGAAAATCCGCAAGTGCGTGAAAAAGTGGT
GGCGATATTCGCGGAAGCCGAACCGTTTACGCCTTCAGATAACGTGGATGCACAGCTTTATAATGGCTTTTTCAGTGACG
CCGATCGTGCAGCAATGAAAATTGTGCTTGAAACCGAGCCGCGTAATTTACCGGCACTGGATATCACTTTTGTTGATAAA
CGGATTGAAAAGCTGTTGTTCAATTATCGGGCACGCAACTTCCCGGGGACGCTGGATTATGCCGAGCAGCAACGCTGGCT
GGAGCACCGCCGCCAGGTCTTCACGCCAGAGTTTTTACAAGGCTATGCAGAAGAGATTCAGATGCTGGCGCAGCAGTATG
CCGACGATAAAGAAAAAGTGGCGCTGTTAAAAGCGCTTTGGCAGTACGCGGAAGAGATTGTCTAA

Domains

Predicted by InterProScan.

Exonuclease (RNase_T)

(12-187)

Exonuclease C-terminal (ExoI_SH3)

(211-471)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sbcB Vibrio cholerae O1 biovar El Tor strain E7946

58.936

99.156

0.584