Detailed information    

insolico Bioinformatically predicted

Overview

Name   radC   Type   Machinery gene
Locus tag   A8V30_RS05960 Genome accession   NZ_CP015846
Coordinates   1158821..1159297 (+) Length   158 a.a.
NCBI ID   WP_001186738.1    Uniprot ID   B7UP40
Organism   Escherichia coli O157:H7 strain FRIK2069     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1153821..1164297
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  A8V30_RS05930 (A8V30_05640) - 1155099..1156004 (+) 906 WP_000203541.1 diguanylate cyclase regulator RdcB family protein -
  A8V30_RS05935 (A8V30_05645) - 1156001..1157071 (+) 1071 WP_000102669.1 patatin-like phospholipase family protein -
  A8V30_RS05950 (A8V30_05655) - 1157411..1158229 (+) 819 WP_001234682.1 DUF932 domain-containing protein -
  A8V30_RS05955 (A8V30_05660) - 1158320..1158805 (+) 486 WP_000214398.1 antirestriction protein -
  A8V30_RS05960 (A8V30_05665) radC 1158821..1159297 (+) 477 WP_001186738.1 JAB domain-containing protein Machinery gene
  A8V30_RS05965 (A8V30_05670) - 1159360..1159581 (+) 222 WP_000692323.1 DUF987 domain-containing protein -
  A8V30_RS05975 (A8V30_05680) - 1159744..1160118 (+) 375 WP_001280953.1 type IV toxin-antitoxin system YeeU family antitoxin -
  A8V30_RS05980 (A8V30_05685) - 1160165..1160539 (+) 375 WP_000854914.1 TA system toxin CbtA family protein -
  A8V30_RS05985 (A8V30_05690) - 1160536..1161027 (+) 492 WP_000976857.1 DUF5983 family protein -
  A8V30_RS05990 (A8V30_05695) - 1161039..1161236 (+) 198 WP_000839282.1 DUF957 domain-containing protein -
  A8V30_RS05995 (A8V30_05700) - 1161321..1162163 (+) 843 WP_001280481.1 DUF4942 domain-containing protein -
  A8V30_RS06005 (A8V30_05710) infA 1162654..1162872 (-) 219 WP_001040187.1 translation initiation factor IF-1 -
  A8V30_RS06015 (A8V30_05715) aat 1163157..1163861 (-) 705 WP_001241680.1 leucyl/phenylalanyl-tRNA--protein transferase -

Sequence

Protein


Download         Length: 158 a.a.        Molecular weight: 17673.28 Da        Isoelectric Point: 6.9242

>NTDB_id=155178 A8V30_RS05960 WP_001186738.1 1158821..1159297(+) (radC) [Escherichia coli O157:H7 strain FRIK2069]
MQQLSFLPGEMTPGERSLILRALQTLDRHLHEPGVAFTSTRAAREWLILNMAGLEREEFRVLYLNNQNQLIAGETLFTGT
INRTEVHPREVIKRALYHNAAAVVLAHNHPSGEVTPSKADRLITERLVQALGLVDIRVPDHLIVGGNQVFSFAEHGLL

Nucleotide


Download         Length: 477 bp        

>NTDB_id=155178 A8V30_RS05960 WP_001186738.1 1158821..1159297(+) (radC) [Escherichia coli O157:H7 strain FRIK2069]
ATGCAGCAGCTTTCCTTTCTGCCCGGAGAGATGACGCCCGGCGAGCGCAGTCTCATTCTGCGGGCCCTGCAAACCCTGGA
CCGCCATCTTCATGAACCCGGCGTGGCCTTCACCTCCACCCGTGCGGCACGGGAATGGCTGATTCTGAACATGGCGGGAC
TGGAGCGGGAAGAGTTCCGGGTGCTGTATCTGAACAACCAGAATCAGCTGATTGCCGGTGAAACCCTCTTCACCGGCACC
ATCAACCGTACGGAAGTTCATCCCCGGGAAGTGATTAAACGCGCCCTGTACCACAATGCCGCTGCCGTGGTGCTGGCGCA
CAATCACCCGTCCGGTGAAGTCACACCCAGTAAGGCAGACCGGCTTATCACCGAACGTCTGGTACAGGCACTGGGCCTGG
TGGATATCCGGGTGCCGGACCATCTGATAGTCGGTGGCAACCAGGTTTTCTCCTTTGCCGAACATGGTCTGCTTTAA

Domains

Predicted by InterProScan.

RadC-like JAB domain (RadC)

(38-157)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB B7UP40

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radC Haemophilus influenzae Rd KW20

54.867

71.519

0.392