Detailed information NTG0155131

Bioinformatically predicted

Overview

• Name: waaF
• Type: Regulator
• Locus tag: CDOMC_RS02090
• Genome accession: NZ_CP012552
• Coordinates: 396634..397593 (-)
• Length: 319 a.a.
• NCBI ID: WP_172127510.1
• Uniprot ID: A0A6G5R1S7
• Organism: Campylobacter sp. RM16192
• Function: repress natural transformation (predicted from homology) Competence regulation

Genomic Context

Location: 391634..402593

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
CDOMC_RS02055 (CDOMC_0403)	ccoS	391892..392113 (+)	222	WP_172127498.1	cbb3-type cytochrome oxidase assembly protein CcoS	-
CDOMC_RS02060 (CDOMC_0404)	-	392161..392463 (-)	303	WP_172127500.1	c-type cytochrome	-
CDOMC_RS02065 (CDOMC_0405)	-	392724..393029 (-)	306	WP_172127502.1	c-type cytochrome	-
CDOMC_RS02070 (CDOMC_0406)	-	393148..393660 (+)	513	WP_172127504.1	HAD family hydrolase	-
CDOMC_RS02075 (CDOMC_0407)	rfaD	393660..394649 (+)	990	WP_172127506.1	ADP-glyceromanno-heptose 6-epimerase	-
CDOMC_RS02080 (CDOMC_0408)	rfaE1	394642..396048 (+)	1407	WP_172127508.1	D-glycero-beta-D-manno-heptose-7-phosphate kinase	-
CDOMC_RS02085 (CDOMC_0409)	gmhA	396035..396601 (+)	567	WP_269467714.1	D-sedoheptulose 7-phosphate isomerase	-
CDOMC_RS02090 (CDOMC_0410)	waaF	396634..397593 (-)	960	WP_172127510.1	lipopolysaccharide heptosyltransferase II	Regulator
CDOMC_RS02095 (CDOMC_0411)	-	397577..398611 (-)	1035	WP_172127512.1	glycosyltransferase	-
CDOMC_RS02100 (CDOMC_0412)	-	398663..399580 (+)	918	WP_172127514.1	glycosyltransferase family 9 protein	-
CDOMC_RS10125	-	400100..400609 (+)	510	WP_236861330.1	glycosyltransferase family 4 protein	-
CDOMC_RS10130	-	400684..400857 (+)	174	WP_236861331.1	hypothetical protein	-
CDOMC_RS02110 (CDOMC_0414)	-	400854..401600 (+)	747	WP_236861332.1	glycosyltransferase family 9 protein	-

Sequence

Protein

• Length: 319 a.a.
• Molecular weight: 36632.95 Da
• Isoelectric Point: 9.4829

>NTDB_id=155131 CDOMC_RS02090 WP_172127510.1 396634..397593(-) (waaF) [Campylobacter sp. RM16192]
MRIFIELPTWLGDCIMATPAIESILLKFPKAKFTFFGSFAATELIKNHPNCEQILIDDSKKNKSRFLSIFKTAKTLGKFD
IAISFRSSFTSRFLMFFLSAKRKFKFKKTKNITHQVKKYQNFIQQSLNLDIIHDELKLDFEPFKFEKKSIGLNPGASYGS
AKRWYPEYFAEVAKEFSSEFEIVIFGSKSEAEICNKIEEILTKENIECENLAGKTDIKELCEKIGGIDIFITNDSGPMHI
AAAYKVPTIAIFGPTKFKETSPWHNDKAHILHLNLKCAPCMKRVCPIGTHECMKELKPQMIIEAIRKNFKEILEKRASI

Nucleotide

• Length: 960 bp

>NTDB_id=155131 CDOMC_RS02090 WP_172127510.1 396634..397593(-) (waaF) [Campylobacter sp. RM16192]
ATGCGAATCTTCATTGAGCTTCCGACTTGGCTAGGTGACTGCATTATGGCAACTCCAGCAATAGAAAGCATATTGCTTAA
ATTTCCAAAGGCCAAATTTACATTTTTTGGCTCGTTTGCAGCAACAGAACTTATAAAAAACCATCCGAACTGCGAGCAAA
TACTGATTGATGACAGCAAAAAAAATAAAAGTCGCTTTCTAAGTATCTTTAAAACCGCAAAAACTCTAGGCAAATTTGAT
ATTGCAATTAGCTTTAGAAGTAGTTTTACAAGTAGATTTTTAATGTTTTTTTTAAGCGCGAAGCGAAAATTTAAATTTAA
AAAGACAAAAAACATAACTCATCAAGTAAAAAAATATCAAAATTTCATACAACAATCACTAAATTTAGACATTATACACG
ATGAATTAAAATTAGATTTTGAGCCTTTTAAATTTGAAAAAAAGAGTATAGGACTAAATCCAGGCGCAAGCTATGGAAGT
GCAAAAAGATGGTATCCTGAATACTTTGCCGAGGTTGCTAAAGAGTTTAGCAGTGAGTTTGAAATAGTGATTTTTGGATC
AAAAAGCGAAGCCGAGATTTGTAATAAAATTGAGGAAATTTTAACCAAAGAAAATATAGAGTGCGAAAATTTAGCCGGAA
AAACCGATATAAAAGAGCTTTGCGAAAAAATCGGCGGAATAGATATTTTCATAACAAACGACAGCGGTCCTATGCATATA
GCGGCAGCTTATAAAGTGCCCACTATAGCTATTTTTGGACCAACAAAATTTAAAGAAACCAGTCCTTGGCATAACGATAA
AGCACATATCTTGCATCTAAATCTAAAATGTGCGCCTTGCATGAAACGAGTCTGTCCAATTGGAACGCACGAATGTATGA
AAGAGCTAAAACCACAGATGATTATAGAGGCTATAAGGAAAAATTTTAAAGAAATTTTAGAAAAAAGAGCATCTATATAG

Domains

Predicted by InterproScan.

• Glycosyltransferase family 9 (heptosyltransferase) (Glyco_transf_9) (125-287)

3D structure

• AlphaFold DB: A0A6G5R1S7

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
waaF	Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819	48.438	100	0.486