Detailed information
Bioinformatically predicted
Overview
| Name | waaF | Type | Regulator |
| Locus tag | CDOMF_RS08310 | Genome accession | NZ_CP012549 |
| Coordinates | 1563083..1564042 (+) | Length | 319 a.a. |
| NCBI ID | WP_260951530.1 | Uniprot ID | - |
| Organism | Campylobacter sp. RM16187 | ||
| Function | repress natural transformation (predicted from homology) Competence regulation |
||
Genomic Context
Location: 1558083..1569042
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| CDOMF_RS08290 (CDOMF_1630) | - | 1558784..1559827 (-) | 1044 | WP_260951526.1 | glycosyltransferase | - |
| CDOMF_RS08295 (CDOMF_1631) | - | 1559805..1561115 (-) | 1311 | WP_260951527.1 | O-antigen ligase family protein | - |
| CDOMF_RS08300 (CDOMF_1632) | - | 1561090..1562016 (-) | 927 | WP_260951528.1 | glycosyltransferase family 9 protein | - |
| CDOMF_RS08305 (CDOMF_1633) | - | 1562068..1563099 (+) | 1032 | WP_260951529.1 | glycosyltransferase family 4 protein | - |
| CDOMF_RS08310 (CDOMF_1634) | waaF | 1563083..1564042 (+) | 960 | WP_260951530.1 | lipopolysaccharide heptosyltransferase II | Regulator |
| CDOMF_RS08315 (CDOMF_1635) | gmhA | 1564073..1564639 (-) | 567 | WP_260951531.1 | D-sedoheptulose 7-phosphate isomerase | - |
| CDOMF_RS08320 (CDOMF_1636) | rfaE1 | 1564626..1566032 (-) | 1407 | WP_260951532.1 | D-glycero-beta-D-manno-heptose-7-phosphate kinase | - |
| CDOMF_RS08325 (CDOMF_1637) | rfaD | 1566025..1567014 (-) | 990 | WP_260951533.1 | ADP-glyceromanno-heptose 6-epimerase | - |
| CDOMF_RS08330 (CDOMF_1638) | - | 1567011..1567526 (-) | 516 | WP_260951534.1 | HAD family hydrolase | - |
| CDOMF_RS08335 (CDOMF_1639) | - | 1567647..1567952 (+) | 306 | WP_169972928.1 | c-type cytochrome | - |
| CDOMF_RS08340 (CDOMF_1640) | - | 1568041..1568343 (+) | 303 | WP_170019311.1 | c-type cytochrome | - |
| CDOMF_RS08345 (CDOMF_1641) | - | 1568483..1568785 (+) | 303 | WP_170019310.1 | c-type cytochrome | - |
| CDOMF_RS08350 (CDOMF_1642) | ccoS | 1568816..1569037 (-) | 222 | WP_170019309.1 | cbb3-type cytochrome oxidase assembly protein CcoS | - |
Sequence
Protein
Download Length: 319 a.a. Molecular weight: 36638.05 Da Isoelectric Point: 9.9794
>NTDB_id=155122 CDOMF_RS08310 WP_260951530.1 1563083..1564042(+) (waaF) [Campylobacter sp. RM16187]
MRIFIELPTWLGDAIMATPAIESIVLKFPKAKFTFFGSFAATELIKNHPNCEQVLIDDSKKDKSRFLNIFKTAKNLGKFD
IAISFRSSFTSRFLMFFLNAKRKFKFKKIKSRAHQVKKYQNFIQQSLKLDIIYDELKLDFKPFKFEKKSIGLNPGASYGS
AKRWYPEYFAEVAKEFSSEFKIVIFGSKSETEICNKIEAILTQENIECENLAGKTDIKELCEKIGGIDIFITNDSGPMHI
AAAYKVPTIAIFGPTKFKETSPWHNDKSHILHLTLKCAPCMKRICPIGTHECMKELKPQMVIEAIRKNFKEILDKRASI
MRIFIELPTWLGDAIMATPAIESIVLKFPKAKFTFFGSFAATELIKNHPNCEQVLIDDSKKDKSRFLNIFKTAKNLGKFD
IAISFRSSFTSRFLMFFLNAKRKFKFKKIKSRAHQVKKYQNFIQQSLKLDIIYDELKLDFKPFKFEKKSIGLNPGASYGS
AKRWYPEYFAEVAKEFSSEFKIVIFGSKSETEICNKIEAILTQENIECENLAGKTDIKELCEKIGGIDIFITNDSGPMHI
AAAYKVPTIAIFGPTKFKETSPWHNDKSHILHLTLKCAPCMKRICPIGTHECMKELKPQMVIEAIRKNFKEILDKRASI
Nucleotide
Download Length: 960 bp
>NTDB_id=155122 CDOMF_RS08310 WP_260951530.1 1563083..1564042(+) (waaF) [Campylobacter sp. RM16187]
ATGCGTATCTTCATTGAGCTTCCGACCTGGCTTGGTGATGCAATTATGGCAACGCCTGCGATTGAGAGCATAGTACTTAA
ATTTCCAAAGGCTAAATTTACATTTTTTGGCTCTTTTGCGGCAACAGAGCTCATAAAAAACCATCCAAATTGCGAGCAAG
TACTGATTGATGACAGCAAAAAGGATAAAAGTCGCTTTCTAAATATCTTTAAAACCGCAAAAAATTTAGGCAAATTTGAT
ATTGCAATTAGCTTTAGGAGCAGCTTTACAAGTAGATTTTTAATGTTTTTTTTGAACGCAAAACGAAAATTTAAATTTAA
AAAGATAAAAAGCAGGGCTCATCAAGTAAAAAAATATCAAAATTTCATACAACAATCACTCAAATTAGACATTATCTATG
ATGAATTAAAATTAGACTTTAAGCCTTTTAAATTTGAGAAAAAGAGTATAGGACTAAATCCCGGAGCAAGCTATGGAAGT
GCCAAAAGATGGTATCCGGAGTACTTTGCAGAGGTTGCCAAGGAGTTTAGCAGTGAGTTTAAAATAGTGATTTTTGGCTC
AAAAAGCGAAACTGAGATTTGCAATAAGATTGAGGCAATTTTAACACAAGAAAATATAGAGTGTGAAAATTTAGCCGGAA
AAACCGACATAAAAGAGCTTTGCGAAAAAATCGGCGGAATAGATATTTTTATCACAAACGATAGTGGTCCTATGCATATA
GCGGCTGCTTACAAAGTGCCTACTATAGCAATTTTTGGACCAACTAAATTCAAAGAAACCAGCCCCTGGCATAACGACAA
ATCACATATCCTACATCTAACTCTAAAGTGTGCTCCCTGCATGAAGCGAATATGTCCTATTGGCACACACGAATGCATGA
AAGAGCTAAAACCTCAGATGGTTATAGAGGCTATAAGGAAAAATTTTAAAGAAATTTTAGACAAGAGAGCGTCTATATAG
ATGCGTATCTTCATTGAGCTTCCGACCTGGCTTGGTGATGCAATTATGGCAACGCCTGCGATTGAGAGCATAGTACTTAA
ATTTCCAAAGGCTAAATTTACATTTTTTGGCTCTTTTGCGGCAACAGAGCTCATAAAAAACCATCCAAATTGCGAGCAAG
TACTGATTGATGACAGCAAAAAGGATAAAAGTCGCTTTCTAAATATCTTTAAAACCGCAAAAAATTTAGGCAAATTTGAT
ATTGCAATTAGCTTTAGGAGCAGCTTTACAAGTAGATTTTTAATGTTTTTTTTGAACGCAAAACGAAAATTTAAATTTAA
AAAGATAAAAAGCAGGGCTCATCAAGTAAAAAAATATCAAAATTTCATACAACAATCACTCAAATTAGACATTATCTATG
ATGAATTAAAATTAGACTTTAAGCCTTTTAAATTTGAGAAAAAGAGTATAGGACTAAATCCCGGAGCAAGCTATGGAAGT
GCCAAAAGATGGTATCCGGAGTACTTTGCAGAGGTTGCCAAGGAGTTTAGCAGTGAGTTTAAAATAGTGATTTTTGGCTC
AAAAAGCGAAACTGAGATTTGCAATAAGATTGAGGCAATTTTAACACAAGAAAATATAGAGTGTGAAAATTTAGCCGGAA
AAACCGACATAAAAGAGCTTTGCGAAAAAATCGGCGGAATAGATATTTTTATCACAAACGATAGTGGTCCTATGCATATA
GCGGCTGCTTACAAAGTGCCTACTATAGCAATTTTTGGACCAACTAAATTCAAAGAAACCAGCCCCTGGCATAACGACAA
ATCACATATCCTACATCTAACTCTAAAGTGTGCTCCCTGCATGAAGCGAATATGTCCTATTGGCACACACGAATGCATGA
AAGAGCTAAAACCTCAGATGGTTATAGAGGCTATAAGGAAAAATTTTAAAGAAATTTTAGACAAGAGAGCGTCTATATAG
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| waaF | Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819 |
48.438 |
100 |
0.486 |