Detailed information    

insolico Bioinformatically predicted

Overview

Name   dprB   Type   Machinery gene
Locus tag   CPIN17262_RS01095 Genome accession   NZ_CP012548
Coordinates   209495..209881 (+) Length   128 a.a.
NCBI ID   WP_069638041.1    Uniprot ID   A0AAX0L8T8
Organism   Campylobacter pinnipediorum subsp. pinnipediorum strain RM17262     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 204495..214881
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CPIN17262_RS01070 (CPIN17262_0212) - 205425..206087 (+) 663 WP_069636358.1 Crp/Fnr family transcriptional regulator -
  CPIN17262_RS01075 (CPIN17262_0213) - 206115..207293 (+) 1179 WP_418228262.1 replication-associated recombination protein A -
  CPIN17262_RS01080 (CPIN17262_0214) moaC 207535..208008 (+) 474 WP_194284771.1 cyclic pyranopterin monophosphate synthase MoaC -
  CPIN17262_RS01085 (CPIN17262_0215) - 207989..208252 (+) 264 WP_226996960.1 DUF493 family protein -
  CPIN17262_RS01090 (CPIN17262_0216) - 208265..209482 (+) 1218 WP_078405823.1 hypothetical protein -
  CPIN17262_RS01095 (CPIN17262_0217) dprB 209495..209881 (+) 387 WP_069638041.1 Holliday junction resolvase RuvX Machinery gene
  CPIN17262_RS01100 (CPIN17262_0218) - 209894..211528 (+) 1635 WP_078405824.1 multidrug ABC transporter permease/ATP-binding protein -
  CPIN17262_RS01105 (CPIN17262_0219) - 211578..212291 (+) 714 WP_078387379.1 NADH dehydrogenase -
  CPIN17262_RS01110 (CPIN17262_0220) - 212291..214660 (+) 2370 WP_078387380.1 tetratricopeptide repeat protein -

Sequence

Protein


Download         Length: 128 a.a.        Molecular weight: 14344.70 Da        Isoelectric Point: 9.4850

>NTDB_id=155105 CPIN17262_RS01095 WP_069638041.1 209495..209881(+) (dprB) [Campylobacter pinnipediorum subsp. pinnipediorum strain RM17262]
MNDEKFIAIDIGLKRIGLAFGFKGVVVPLTPILRKNRNQASRDISRVLGEYNADILVVGVPIGGSSEDEMRRRILHFVSL
LDFTGKIIYQDESFSSFEAADFVKDKRDGKLDSMAALIILKRYLQIPA

Nucleotide


Download         Length: 387 bp        

>NTDB_id=155105 CPIN17262_RS01095 WP_069638041.1 209495..209881(+) (dprB) [Campylobacter pinnipediorum subsp. pinnipediorum strain RM17262]
ATGAATGATGAAAAATTTATAGCCATAGATATCGGCTTAAAGCGTATAGGATTGGCTTTCGGATTTAAGGGTGTTGTTGT
TCCTCTTACACCTATACTTAGGAAAAATCGCAACCAAGCATCAAGAGATATCAGTAGGGTTTTGGGTGAATATAATGCTG
ATATTTTGGTTGTTGGAGTGCCTATTGGTGGGAGTAGTGAAGATGAGATGAGAAGAAGAATATTGCATTTTGTATCCTTG
CTTGATTTTACTGGAAAGATTATATATCAAGATGAATCGTTTAGTAGCTTTGAGGCTGCTGATTTTGTAAAAGATAAAAG
AGATGGTAAGCTTGATAGTATGGCCGCACTAATAATACTAAAAAGATATTTGCAAATACCTGCATAA

Domains

Predicted by InterproScan.

Holliday junction resolvase (RuvX)

(5-125)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dprB Helicobacter pylori 26695

48.062

100

0.484

Multiple sequence alignment