Detailed information    

insolico Bioinformatically predicted

Overview

Name   dprB   Type   Machinery gene
Locus tag   CPIN17260_RS01275 Genome accession   NZ_CP012546
Coordinates   242670..243056 (+) Length   128 a.a.
NCBI ID   WP_078440437.1    Uniprot ID   -
Organism   Campylobacter pinnipediorum subsp. pinnipediorum strain RM17260     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 237670..248056
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CPIN17260_RS01250 (CPIN17260_0250) - 238591..239253 (+) 663 WP_069636358.1 Crp/Fnr family transcriptional regulator -
  CPIN17260_RS01255 (CPIN17260_0251) - 239281..240459 (+) 1179 WP_418225667.1 replication-associated recombination protein A -
  CPIN17260_RS01260 (CPIN17260_0252) moaC 240701..241174 (+) 474 WP_193431673.1 cyclic pyranopterin monophosphate synthase MoaC -
  CPIN17260_RS01265 (CPIN17260_0253) - 241155..241418 (+) 264 WP_226996960.1 DUF493 family protein -
  CPIN17260_RS01270 (CPIN17260_0254) - 241430..242641 (+) 1212 WP_078440436.1 hypothetical protein -
  CPIN17260_RS01275 (CPIN17260_0255) dprB 242670..243056 (+) 387 WP_078440437.1 Holliday junction resolvase RuvX Machinery gene
  CPIN17260_RS01280 (CPIN17260_0256) - 243069..244703 (+) 1635 WP_078440438.1 multidrug ABC transporter permease/ATP-binding protein -
  CPIN17260_RS01285 (CPIN17260_0257) - 244753..245466 (+) 714 WP_078440439.1 NADH dehydrogenase -
  CPIN17260_RS01290 (CPIN17260_0258) - 245466..247835 (+) 2370 WP_078440440.1 tetratricopeptide repeat protein -

Sequence

Protein


Download         Length: 128 a.a.        Molecular weight: 14344.65 Da        Isoelectric Point: 8.4625

>NTDB_id=155084 CPIN17260_RS01275 WP_078440437.1 242670..243056(+) (dprB) [Campylobacter pinnipediorum subsp. pinnipediorum strain RM17260]
MNDEKFVAIDIGLKRIGLAFGFKGVVVPLTPILRKNRNQASRDISRVLGEYNADILVVGVPIGGSSEDEMRRRILHFVSL
LDFDGKIIYQDESFSSFEAADFVKDKRDGKLDSMAALIILKRYLQIPA

Nucleotide


Download         Length: 387 bp        

>NTDB_id=155084 CPIN17260_RS01275 WP_078440437.1 242670..243056(+) (dprB) [Campylobacter pinnipediorum subsp. pinnipediorum strain RM17260]
ATGAACGATGAAAAATTTGTAGCTATAGATATCGGATTAAAGCGTATAGGATTAGCTTTTGGGTTTAAAGGTGTAGTTGT
TCCGCTTACACCTATACTTAGGAAAAATCGTAACCAAGCATCAAGAGATATCAGTAGGGTTTTGGGTGAATATAATGCTG
ATATTTTGGTCGTTGGCGTGCCTATTGGTGGGAGTAGTGAAGATGAAATGAGAAGAAGGATATTGCATTTTGTATCTTTG
CTTGATTTTGATGGAAAGATTATATATCAAGATGAATCGTTTAGTAGCTTTGAGGCTGCTGATTTTGTAAAAGATAAAAG
AGATGGTAAGCTTGATAGTATGGCCGCACTAATAATACTAAAAAGATATTTGCAAATACCTGCATAA

Domains

Predicted by InterproScan.

Holliday junction resolvase (RuvX)

(6-125)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dprB Helicobacter pylori 26695

48.062

100

0.484

Multiple sequence alignment