Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   CMUC_RS07185 Genome accession   NZ_CP012542
Coordinates   1315630..1316970 (+) Length   446 a.a.
NCBI ID   WP_171993991.1    Uniprot ID   A0A6G5QHK4
Organism   Campylobacter mucosalis CCUG 21559     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1310630..1321970
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CMUC_RS07150 (CMUC_1412) - 1310746..1311333 (-) 588 WP_034966942.1 lipid-binding SYLF domain-containing protein -
  CMUC_RS07155 (CMUC_1413) rny 1311343..1312896 (-) 1554 WP_034966940.1 ribonuclease Y -
  CMUC_RS07160 (CMUC_1414) - 1312817..1313458 (-) 642 WP_034967628.1 5-formyltetrahydrofolate cyclo-ligase -
  CMUC_RS07165 (CMUC_1415) - 1313508..1314089 (+) 582 WP_034966937.1 TlpA family protein disulfide reductase -
  CMUC_RS07170 (CMUC_1416) ftsY 1314086..1314928 (+) 843 WP_034966935.1 signal recognition particle-docking protein FtsY -
  CMUC_RS07175 (CMUC_1417) - 1314921..1315304 (+) 384 WP_236844909.1 VanZ family protein -
  CMUC_RS07180 (CMUC_1418) - 1315350..1315577 (-) 228 WP_034966929.1 hypothetical protein -
  CMUC_RS07185 (CMUC_1419) radA 1315630..1316970 (+) 1341 WP_171993991.1 DNA repair protein RadA Machinery gene
  CMUC_RS07190 (CMUC_1420) cmoA 1316975..1317679 (-) 705 WP_171994397.1 carboxy-S-adenosyl-L-methionine synthase CmoA -
  CMUC_RS07195 (CMUC_1421) - 1317798..1318649 (-) 852 WP_171993992.1 bifunctional riboflavin kinase/FAD synthetase -
  CMUC_RS07200 (CMUC_1422) - 1318615..1319322 (-) 708 WP_171993993.1 TlyA family RNA methyltransferase -
  CMUC_RS07205 (CMUC_1423) ligA 1319319..1321265 (-) 1947 WP_171993994.1 NAD-dependent DNA ligase LigA -

Sequence

Protein


Download         Length: 446 a.a.        Molecular weight: 48950.49 Da        Isoelectric Point: 7.1185

>NTDB_id=155043 CMUC_RS07185 WP_171993991.1 1315630..1316970(+) (radA) [Campylobacter mucosalis CCUG 21559]
MAKNKAVFECQSCGNQQGKWVGKCPNCGAWDSFIELSQTQIKVNEEIAKISNTPSKAVGIDKVEIESINRFSTSDKELDL
VLGGGVVEGSLVLIGGSPGIGKSTLLLKIGSNLAKDDKKTLYVSGEESASQIKMRAERLNAVDKNLYLLTEICLENIIAE
VRKSEYKVLIIDSIQTLYSEKVSSAPGSVSQVREITFELLRLAKDENICVFIIGHITKEGAIAGPRVLEHMVDVVLYFEG
DASRELRILRGFKNRFGSTSEVGIFEMGKNGLVSATEISSKFFTRGNAISGSAITIIMEGTRALSVEIQALVCESSYPKR
SSTGYEKNRLDMLLALLERKLEIPLGHYDVFINVSGGVKITETAADLAVVAAIISSFKNRPISKESVFIGELSLNGEIRD
VFNIDQRLKEAKTQKFKNAIIPSKPLDTQGIKCFYAKEITQVIEWM

Nucleotide


Download         Length: 1341 bp        

>NTDB_id=155043 CMUC_RS07185 WP_171993991.1 1315630..1316970(+) (radA) [Campylobacter mucosalis CCUG 21559]
ATGGCAAAAAATAAGGCAGTTTTTGAGTGTCAAAGCTGTGGCAATCAGCAAGGCAAATGGGTGGGAAAATGTCCAAATTG
CGGTGCTTGGGATAGCTTTATAGAACTTAGTCAAACACAGATAAAAGTAAATGAAGAGATAGCAAAAATTTCAAACACGC
CAAGCAAAGCAGTTGGTATTGATAAGGTTGAGATTGAGAGCATTAATAGATTTTCAACCAGCGATAAAGAGCTTGATTTG
GTGCTTGGAGGCGGTGTGGTTGAAGGCTCACTCGTGCTAATTGGAGGCAGTCCTGGCATTGGCAAATCAACGCTTCTTTT
AAAAATCGGCTCAAATTTAGCCAAGGATGATAAAAAAACACTTTATGTAAGTGGCGAGGAGAGTGCTAGTCAGATAAAAA
TGAGAGCCGAGCGACTAAATGCAGTGGATAAAAATTTATACCTTTTAACTGAAATTTGCCTTGAAAATATCATCGCCGAG
GTGCGAAAGAGCGAGTATAAGGTGCTTATAATTGACTCAATCCAAACGCTATATTCAGAAAAAGTAAGCTCGGCACCGGG
TTCAGTTTCGCAGGTTCGTGAGATTACATTTGAGCTTTTAAGACTTGCAAAAGATGAAAATATCTGCGTTTTTATCATCG
GACACATTACAAAAGAGGGTGCGATAGCAGGACCTAGAGTGCTTGAACATATGGTTGATGTGGTGCTTTATTTTGAGGGC
GATGCGTCAAGAGAGTTGCGAATTTTACGTGGTTTTAAAAATCGCTTTGGTTCAACAAGTGAGGTTGGAATTTTTGAAAT
GGGCAAAAATGGCTTAGTTTCAGCCACTGAAATTTCAAGCAAATTTTTCACTCGTGGTAACGCCATAAGTGGCTCGGCAA
TCACAATAATAATGGAGGGCACACGTGCTTTAAGTGTTGAGATTCAAGCTCTTGTTTGCGAGAGTAGCTACCCAAAACGA
AGTTCGACTGGATATGAAAAAAACCGCCTTGATATGCTCTTAGCACTTTTGGAGCGAAAGCTTGAAATTCCGCTGGGGCA
TTATGATGTCTTTATAAACGTTTCAGGTGGCGTTAAAATCACAGAAACAGCAGCTGATTTAGCAGTGGTTGCGGCTATTA
TTTCAAGTTTTAAAAATCGTCCAATTAGTAAAGAGAGTGTTTTTATCGGAGAGCTTAGCTTAAACGGCGAAATCCGCGAT
GTTTTTAATATAGACCAACGCCTAAAGGAGGCAAAAACGCAAAAATTTAAAAATGCGATAATTCCCAGCAAACCGCTTGA
TACGCAGGGGATTAAGTGCTTTTACGCAAAAGAGATTACGCAAGTAATTGAGTGGATGTGA

Domains

Predicted by InterproScan.

Subunit ChlI of Mg-chelatase (ChlI)

(348-423)

AAA domain (AAA_25)

(67-220)

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(8-35)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A6G5QHK4

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Streptococcus mitis SK321

48.115

100

0.487
  radA Streptococcus pneumoniae Rx1

49.652

96.637

0.48
  radA Streptococcus pneumoniae D39

49.652

96.637

0.48
  radA Streptococcus pneumoniae TIGR4

49.652

96.637

0.48
  radA Streptococcus pneumoniae R6

49.652

96.637

0.48
  radA Streptococcus mitis NCTC 12261

49.42

96.637

0.478
  radA Bacillus subtilis subsp. subtilis str. 168

48.611

96.861

0.471

Multiple sequence alignment