Detailed information    

insolico Bioinformatically predicted

Overview

Name   waaF   Type   Regulator
Locus tag   CCON33237_RS02205 Genome accession   NZ_CP012541
Coordinates   443639..444583 (+) Length   314 a.a.
NCBI ID   WP_054196204.1    Uniprot ID   A0A0M4TM03
Organism   Campylobacter concisus strain ATCC 33237     
Function   repress natural transformation (predicted from homology)   
Competence regulation

Genomic Context

Location: 438639..449583
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CCON33237_RS02190 (CCON33237_0430) - 439366..439764 (+) 399 WP_054197376.1 DUF2809 domain-containing protein -
  CCON33237_RS02195 (CCON33237_0431) polA 439843..442479 (-) 2637 WP_054196202.1 DNA polymerase I -
  CCON33237_RS02200 (CCON33237_0432) - 442599..443642 (+) 1044 WP_054196203.1 glycosyltransferase family 4 protein -
  CCON33237_RS02205 (CCON33237_0433) waaF 443639..444583 (+) 945 WP_054196204.1 lipopolysaccharide heptosyltransferase II Regulator
  CCON33237_RS02210 (CCON33237_0434) exbB 444719..445147 (+) 429 WP_054196205.1 TonB-system energizer ExbB -
  CCON33237_RS02215 (CCON33237_0435) exbD 445134..445517 (+) 384 WP_054196206.1 TonB system transport protein ExbD -
  CCON33237_RS02220 (CCON33237_0436) - 445492..446268 (+) 777 WP_054196207.1 energy transducer TonB -
  CCON33237_RS02230 (CCON33237_0438) - 446840..448507 (+) 1668 WP_054196208.1 anaerobic C4-dicarboxylate transporter -

Sequence

Protein


Download         Length: 314 a.a.        Molecular weight: 35635.95 Da        Isoelectric Point: 9.6723

>NTDB_id=155027 CCON33237_RS02205 WP_054196204.1 443639..444583(+) (waaF) [Campylobacter concisus strain ATCC 33237]
MRVFIELPTWLGDAVMASGAIENLSKNAKNIVFFGSYVACELYKSHPKCEKVVIDDSKKQNSRYLSLIKTASKLGKFDIA
ISFRSSFASKFLLFFLKAKQKFCFKKSSESLHQVQKYLNFIKKSLNLKEISNELKIYYEAKKSEQKLLVLNPGASYGSAK
RWYPHYFAEVALHFKDEFDVKITGSKAELEICNEIEQILLQNGVKCENLAGKTSIKELCEVIGSIKNGIFLTNDSGPMHI
AAAYKVPLVALFGPTKFKETSPWQDESAKMVHLNLDCMPCMKRVCPIKTHACMKELTPKMVIAEIELLRKKLNF

Nucleotide


Download         Length: 945 bp        

>NTDB_id=155027 CCON33237_RS02205 WP_054196204.1 443639..444583(+) (waaF) [Campylobacter concisus strain ATCC 33237]
GTGAGAGTTTTTATAGAGCTTCCAACCTGGCTTGGAGATGCTGTGATGGCGAGCGGGGCGATAGAAAATTTAAGTAAAAA
TGCTAAAAATATTGTATTTTTTGGCTCTTATGTGGCCTGTGAACTTTACAAATCACATCCAAAGTGTGAAAAAGTAGTCA
TTGACGATAGTAAAAAGCAAAACTCAAGATATTTAAGTCTTATAAAAACAGCTAGCAAGCTTGGAAAATTTGATATTGCT
ATTAGTTTTAGAAGCTCATTTGCTAGTAAATTTTTGCTTTTTTTTCTAAAAGCAAAGCAAAAATTTTGCTTTAAAAAGAG
TAGCGAGAGCTTGCATCAGGTGCAAAAATATCTAAATTTCATAAAGAAAAGCCTAAATTTAAAAGAAATTTCAAACGAAT
TAAAAATTTATTATGAAGCTAAGAAAAGCGAGCAAAAGCTTCTCGTGCTAAATCCAGGTGCTAGCTACGGAAGTGCCAAA
AGGTGGTATCCGCACTATTTTGCAGAGGTTGCACTGCACTTTAAGGATGAATTTGATGTAAAGATTACTGGCTCAAAAGC
CGAGCTTGAAATTTGCAATGAAATCGAGCAAATACTCTTACAAAATGGTGTGAAATGTGAAAATTTGGCTGGAAAAACAA
GCATAAAAGAGCTTTGTGAGGTCATAGGTTCTATAAAAAATGGCATCTTTTTGACAAATGATAGTGGTCCTATGCATATC
GCAGCTGCCTATAAAGTGCCACTTGTGGCTCTTTTTGGGCCGACTAAATTTAAAGAGACTAGCCCATGGCAAGATGAGAG
TGCAAAGATGGTGCATTTAAATTTAGATTGTATGCCATGCATGAAGCGAGTATGTCCTATAAAGACACATGCCTGTATGA
AGGAGCTTACGCCAAAAATGGTTATTGCTGAAATAGAGCTACTAAGAAAAAAATTAAATTTTTGA

Domains

Predicted by InterproScan.

Glycosyltransferase family 9 (heptosyltransferase) (Glyco_transf_9)

(76-288)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0M4TM03

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  waaF Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

47.975

100

0.49

Multiple sequence alignment