Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilA   Type   Machinery gene
Locus tag   AK825_RS06040 Genome accession   NZ_CP012533
Coordinates   1440991..1441962 (+) Length   323 a.a.
NCBI ID   WP_227514145.1    Uniprot ID   -
Organism   Psychrobacter sp. P11G5     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1435991..1446962
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AK825_RS06025 (AK825_06015) - 1436357..1437913 (-) 1557 WP_082787187.1 pitrilysin family protein -
  AK825_RS06030 (AK825_06020) - 1438043..1439515 (-) 1473 WP_149031846.1 pitrilysin family protein -
  AK825_RS06035 (AK825_06025) - 1439933..1440178 (-) 246 WP_068035413.1 hypothetical protein -
  AK825_RS06040 (AK825_06030) pilA 1440991..1441962 (+) 972 WP_227514145.1 signal recognition particle-docking protein FtsY Machinery gene
  AK825_RS06045 (AK825_06035) - 1442014..1442586 (+) 573 WP_068035418.1 methylated-DNA--[protein]-cysteine S-methyltransferase -
  AK825_RS06050 (AK825_06040) - 1442734..1443483 (-) 750 WP_068035420.1 YebC/PmpR family DNA-binding transcriptional regulator -
  AK825_RS06055 (AK825_06045) - 1443836..1444666 (+) 831 WP_068035423.1 ion transporter -
  AK825_RS06060 (AK825_06050) - 1444687..1445988 (-) 1302 WP_068035425.1 AarF/ABC1/UbiB kinase family protein -
  AK825_RS06065 (AK825_06055) aroQ 1446152..1446709 (-) 558 WP_068035427.1 type II 3-dehydroquinate dehydratase -

Sequence

Protein


Download         Length: 323 a.a.        Molecular weight: 34793.80 Da        Isoelectric Point: 5.2665

>NTDB_id=155014 AK825_RS06040 WP_227514145.1 1440991..1441962(+) (pilA) [Psychrobacter sp. P11G5]
MPQDEQENETQGRQKGSWFNRMKSGLSKSRKNLAEGMVSILIGGKEIDDELLEEVEDQLLVADIGVNATNRIIKSLTEQT
ARGDLIYAHSLYKALQSELVDILTPKVAPLVIDTSKKPFVILVVGVNGVGKTTTIGKLAKRLQGEGKSVMLAAGDTFRAA
ATEQLQIWGERNSIPVVAQGHGSDSASVIFDAMQSAKAKNIDVLIADTAGRLQNKTHLMAELEKVVRVMRKADPSAPHEG
MIVLDAGTGQNAINQVELFNKVVPLTGITITKLDGTAKGGVVFNIAETTDVPIRYIGVGESIDDLRAFSPKQFVAALFDT
DES

Nucleotide


Download         Length: 972 bp        

>NTDB_id=155014 AK825_RS06040 WP_227514145.1 1440991..1441962(+) (pilA) [Psychrobacter sp. P11G5]
ATGCCTCAAGACGAGCAAGAAAATGAAACCCAAGGTCGTCAAAAAGGCAGCTGGTTCAACCGCATGAAGTCAGGGCTGAG
TAAGTCACGTAAGAATTTAGCGGAAGGTATGGTCAGTATTCTTATCGGTGGTAAAGAGATCGACGATGAGCTGTTAGAAG
AAGTCGAAGATCAACTGTTGGTCGCTGACATTGGTGTAAACGCAACCAACCGCATTATTAAGAGTCTAACCGAGCAGACA
GCACGTGGGGACTTAATCTATGCACATTCATTGTATAAAGCGTTGCAAAGTGAGTTGGTCGATATCTTAACACCAAAAGT
TGCGCCACTGGTCATCGACACCAGCAAAAAACCTTTTGTTATTTTAGTTGTAGGCGTTAATGGTGTTGGCAAAACGACGA
CTATTGGAAAACTTGCCAAACGTCTACAAGGTGAGGGCAAATCGGTCATGCTGGCTGCGGGTGATACGTTCCGTGCGGCC
GCGACCGAGCAGCTGCAAATTTGGGGTGAGCGTAATAGTATTCCAGTCGTAGCGCAAGGTCACGGCTCAGACAGCGCCTC
TGTTATCTTTGATGCCATGCAGTCTGCTAAGGCTAAAAATATCGATGTGTTAATTGCTGATACTGCTGGTCGCTTGCAGA
ATAAAACGCATCTAATGGCGGAGCTTGAAAAAGTCGTGCGCGTCATGCGTAAAGCCGATCCAAGCGCGCCGCATGAAGGT
ATGATTGTTCTGGATGCTGGTACAGGACAAAATGCTATCAATCAAGTTGAGCTATTTAATAAAGTCGTGCCTTTGACAGG
TATTACTATTACCAAATTAGATGGTACTGCCAAAGGCGGGGTCGTGTTTAATATTGCTGAAACTACTGATGTGCCTATCC
GCTACATTGGTGTTGGCGAGTCCATTGATGATCTACGTGCCTTTAGCCCTAAGCAGTTCGTTGCAGCATTGTTCGATACG
GATGAAAGTTAA

Domains

Predicted by InterproScan.

SRP54-type protein, GTPase domain (SRP54)

(118-318)

SRP54-type protein, helical bundle domain (SRP54_N)

(39-99)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilA Neisseria gonorrhoeae MS11

51.613

95.975

0.495

Multiple sequence alignment