Detailed information    

insolico Bioinformatically predicted

Overview

Name   luxO   Type   Regulator
Locus tag   MS6198_RS21920 Genome accession   NZ_CP015834
Coordinates   4462116..4463525 (-) Length   469 a.a.
NCBI ID   WP_022646353.1    Uniprot ID   -
Organism   Escherichia coli strain MS6198     
Function   promote HapR production (predicted from homology)   
Competence regulation

Genomic Context

Location: 4457116..4468525
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MS6198_RS21900 (MS6198_44560) yihA 4458380..4459012 (-) 633 WP_000183349.1 ribosome biogenesis GTP-binding protein YihA/YsxC -
  MS6198_RS32020 - 4459309..4459475 (+) 167 Protein_4213 hypothetical protein -
  MS6198_RS21905 (MS6198_44590) yihI 4459594..4460103 (+) 510 WP_001572146.1 Der GTPase-activating protein YihI -
  MS6198_RS21910 (MS6198_44600) hemN 4460292..4461665 (+) 1374 WP_001590951.1 oxygen-independent coproporphyrinogen III oxidase -
  MS6198_RS21915 (MS6198_44610) yshB 4461894..4462004 (-) 111 WP_000893994.1 YshB family small membrane protein -
  MS6198_RS21920 (MS6198_44620) luxO 4462116..4463525 (-) 1410 WP_022646353.1 nitrogen regulation protein NR(I) Regulator
  MS6198_RS21925 (MS6198_44630) glnL 4463537..4464586 (-) 1050 WP_000190577.1 nitrogen regulation protein NR(II) -
  MS6198_RS21930 (MS6198_44640) glnA 4464760..4466169 (-) 1410 WP_001271717.1 glutamate--ammonia ligase -
  MS6198_RS21940 (MS6198_44650) typA 4466542..4468365 (+) 1824 WP_000570668.1 ribosome-dependent GTPase TypA -

Sequence

Protein


Download         Length: 469 a.a.        Molecular weight: 52261.73 Da        Isoelectric Point: 6.4081

>NTDB_id=154994 MS6198_RS21920 WP_022646353.1 4462116..4463525(-) (luxO) [Escherichia coli strain MS6198]
MQRGIVWVVDDDSSIRWVLERALAGAGLTCTTFENGAEVLEALASKTPDVLLSDIRMPGMDGLALLKQIKQRHPMLPVII
MTAHSDLDAAVSAYQQGAFDYLPKPFDIDEAVALVERAISHYQEQQQPRNVQLNGPTTDIIGEAPAMQDVFRIIGRLSRS
SISVLINGESGTGKELVAHALHRHSPRAKAPFIALNMAAIPKDLIESELFGHEKGAFTGANTIRQGRFEQADGGTLFLDE
IGDMPLDVQTRLLRVLADGQFYRVGGYAPVKVDVRIIAATHQNLEQRVQEGKFREDLFHRLNVIRVHLPPLRERREDIPR
LAHHFLQVAARELGVEAKLLHPETEAALTRLAWPGNVRQLENTCRWLTVMAAGQEVLIQDLPGELFESTVPESTSQMQPD
SWATLLAQWADRALRSGHQNLLSEAQPELERTLLTTALRHTQGHKQEAARLLGWGRNTLTRKLKELGME

Nucleotide


Download         Length: 1410 bp        

>NTDB_id=154994 MS6198_RS21920 WP_022646353.1 4462116..4463525(-) (luxO) [Escherichia coli strain MS6198]
ATGCAACGAGGGATAGTCTGGGTAGTCGATGACGATAGTTCCATCCGTTGGGTGCTTGAACGTGCGCTCGCTGGAGCGGG
TTTAACCTGTACGACATTTGAGAACGGCGCGGAAGTACTGGAGGCGTTGGCGAGCAAAACGCCGGATGTACTGCTTTCAG
ATATCCGTATGCCGGGAATGGACGGGCTGGCGCTGCTCAAGCAGATTAAACAGCGCCATCCAATGCTTCCGGTCATCATT
ATGACCGCACATTCCGATCTGGATGCTGCCGTCAGCGCCTATCAACAAGGGGCGTTTGATTATCTGCCCAAACCGTTTGA
TATCGACGAAGCCGTGGCGCTGGTTGAGCGCGCCATCAGTCATTATCAGGAACAGCAGCAGCCGCGTAATGTTCAGCTTA
ACGGCCCAACGACCGATATCATCGGCGAAGCGCCAGCCATGCAGGACGTGTTCCGTATTATCGGTCGACTTTCGCGTTCT
TCCATTAGCGTGCTGATCAACGGCGAATCCGGCACTGGTAAAGAACTGGTCGCTCATGCCCTGCATCGCCACAGCCCGCG
AGCCAAAGCGCCGTTTATCGCGCTCAATATGGCGGCTATCCCGAAGGATTTGATCGAATCAGAACTGTTTGGTCACGAGA
AAGGCGCGTTTACCGGCGCGAATACCATTCGTCAGGGGCGTTTTGAACAAGCCGATGGCGGCACGTTATTTCTCGATGAA
ATTGGCGATATGCCGCTGGATGTGCAGACGCGTTTGCTGCGCGTGCTGGCAGACGGTCAGTTTTATCGCGTTGGCGGCTA
TGCACCGGTGAAAGTGGATGTGCGGATTATCGCTGCCACTCACCAGAATCTCGAACAGCGGGTGCAGGAAGGCAAGTTCC
GTGAGGATCTGTTCCACCGCCTGAACGTCATCCGTGTTCATCTGCCGCCGCTGCGTGAGCGTCGGGAAGATATTCCCCGT
CTGGCACACCATTTTTTACAAGTTGCTGCTCGCGAGCTGGGCGTAGAAGCAAAGTTGCTGCATCCGGAAACTGAAGCCGC
TCTGACGCGTCTGGCGTGGCCAGGCAACGTGCGCCAGCTGGAAAACACCTGCCGCTGGCTAACGGTAATGGCTGCCGGAC
AGGAAGTGTTGATTCAGGATTTGCCTGGCGAACTGTTTGAATCAACCGTACCGGAAAGCACTTCACAAATGCAGCCGGAC
AGTTGGGCAACGCTGTTAGCACAGTGGGCAGATCGGGCGCTACGTTCCGGTCATCAAAACTTGCTGTCTGAAGCGCAACC
AGAGTTGGAGCGGACGTTACTGACGACCGCGTTGCGACATACGCAGGGGCATAAACAGGAAGCGGCGCGGCTACTCGGCT
GGGGGCGTAACACTCTGACGCGGAAGTTAAAAGAGCTGGGAATGGAGTGA

Domains

Predicted by InterProScan.

Response regulator receiver domain (Response_reg)

(6-115)

Bacterial regulatory protein, Fis family (HTH_8)

(427-466)

Sigma-54 interaction domain (Sigma54_activat)

(140-306)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  luxO Vibrio cholerae strain A1552

39.655

98.934

0.392
  pilR Pseudomonas aeruginosa PAK

38.854

100

0.39

Multiple sequence alignment