Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilA   Type   Machinery gene
Locus tag   AK823_RS05945 Genome accession   NZ_CP012529
Coordinates   1417153..1418124 (+) Length   323 a.a.
NCBI ID   WP_227514145.1    Uniprot ID   -
Organism   Psychrobacter sp. P2G3     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1412153..1423124
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AK823_RS05930 (AK823_05940) - 1412534..1414090 (-) 1557 WP_068327253.1 pitrilysin family protein -
  AK823_RS05935 (AK823_05945) - 1414220..1415692 (-) 1473 WP_149031846.1 pitrilysin family protein -
  AK823_RS05940 (AK823_05950) - 1416110..1416355 (-) 246 WP_068327256.1 hypothetical protein -
  AK823_RS05945 (AK823_05955) pilA 1417153..1418124 (+) 972 WP_227514145.1 signal recognition particle-docking protein FtsY Machinery gene
  AK823_RS05950 (AK823_05960) - 1418176..1418748 (+) 573 WP_068327262.1 methylated-DNA--[protein]-cysteine S-methyltransferase -
  AK823_RS05955 (AK823_05965) - 1418884..1419633 (-) 750 WP_068035420.1 YebC/PmpR family DNA-binding transcriptional regulator -
  AK823_RS05960 (AK823_05970) - 1419986..1420816 (+) 831 WP_068035423.1 ion transporter -
  AK823_RS05965 (AK823_05975) - 1420837..1422138 (-) 1302 WP_068327265.1 AarF/ABC1/UbiB kinase family protein -
  AK823_RS05970 (AK823_05980) aroQ 1422301..1422858 (-) 558 WP_068327268.1 type II 3-dehydroquinate dehydratase -

Sequence

Protein


Download         Length: 323 a.a.        Molecular weight: 34793.80 Da        Isoelectric Point: 5.2665

>NTDB_id=154994 AK823_RS05945 WP_227514145.1 1417153..1418124(+) (pilA) [Psychrobacter sp. P2G3]
MPQDEQENETQGRQKGSWFNRMKSGLSKSRKNLAEGMVSILIGGKEIDDELLEEVEDQLLVADIGVNATNRIIKSLTEQT
ARGDLIYAHSLYKALQSELVDILTPKVAPLVIDTSKKPFVILVVGVNGVGKTTTIGKLAKRLQGEGKSVMLAAGDTFRAA
ATEQLQIWGERNSIPVVAQGHGSDSASVIFDAMQSAKAKNIDVLIADTAGRLQNKTHLMAELEKVVRVMRKADPSAPHEG
MIVLDAGTGQNAINQVELFNKVVPLTGITITKLDGTAKGGVVFNIAETTDVPIRYIGVGESIDDLRAFSPKQFVAALFDT
DES

Nucleotide


Download         Length: 972 bp        

>NTDB_id=154994 AK823_RS05945 WP_227514145.1 1417153..1418124(+) (pilA) [Psychrobacter sp. P2G3]
ATGCCTCAAGACGAGCAAGAAAATGAAACCCAAGGTCGTCAAAAAGGCAGCTGGTTCAACCGCATGAAGTCAGGGCTGAG
TAAGTCACGTAAGAATTTAGCGGAAGGTATGGTCAGTATTCTTATCGGTGGTAAAGAGATCGACGATGAGCTGTTAGAAG
AAGTCGAAGATCAACTGTTGGTCGCTGACATTGGTGTAAACGCAACCAACCGCATTATTAAGAGTCTAACCGAGCAGACA
GCACGTGGGGACTTAATCTATGCACATTCATTGTATAAAGCGTTGCAAAGTGAGTTGGTCGATATCTTAACGCCAAAAGT
TGCGCCACTGGTCATCGACACCAGCAAAAAACCTTTTGTTATTTTAGTTGTAGGCGTTAATGGTGTTGGCAAAACGACGA
CTATTGGAAAACTTGCCAAACGTCTACAAGGTGAGGGCAAATCGGTCATGTTGGCTGCGGGTGATACGTTCCGTGCGGCC
GCGACTGAGCAGCTGCAAATTTGGGGTGAGCGTAATAGTATTCCAGTCGTAGCGCAAGGTCACGGCTCAGACAGCGCCTC
TGTTATCTTTGATGCCATGCAGTCTGCTAAGGCTAAAAATATCGATGTGTTAATTGCTGATACTGCTGGTCGCTTGCAGA
ATAAAACGCATCTAATGGCGGAGCTTGAAAAAGTCGTGCGCGTCATGCGTAAAGCCGATCCAAGCGCGCCGCATGAAGGT
ATGATTGTTCTGGATGCTGGTACAGGACAAAATGCTATCAATCAAGTTGAGCTATTTAATAAAGTCGTGCCTTTGACGGG
TATTACTATTACCAAATTAGATGGTACTGCCAAAGGCGGGGTCGTGTTTAATATTGCTGAAACTACTGATGTGCCTATCC
GCTACATTGGTGTTGGCGAGTCCATTGATGATCTACGTGCCTTTAGTCCTAAGCAGTTCGTTGCAGCATTGTTCGATACG
GATGAAAGTTAA

Domains

Predicted by InterproScan.

SRP54-type protein, GTPase domain (SRP54)

(118-318)

SRP54-type protein, helical bundle domain (SRP54_N)

(39-99)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilA Neisseria gonorrhoeae MS11

51.613

95.975

0.495

Multiple sequence alignment