Detailed information    

insolico Bioinformatically predicted

Overview

Name   radC   Type   Machinery gene
Locus tag   A8L39_RS19630 Genome accession   NZ_CP015832
Coordinates   3713150..3713626 (-) Length   158 a.a.
NCBI ID   WP_001186745.1    Uniprot ID   -
Organism   Escherichia coli O157 strain 180-PT54     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 3708150..3718626
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  A8L39_RS19585 aat 3708626..3709330 (+) 705 WP_001241680.1 leucyl/phenylalanyl-tRNA--protein transferase -
  A8L39_RS19590 infA 3709615..3709833 (+) 219 WP_001040187.1 translation initiation factor IF-1 -
  A8L39_RS19600 - 3710324..3711166 (-) 843 WP_001684189.1 DUF4942 domain-containing protein -
  A8L39_RS19605 - 3711272..3711448 (-) 177 WP_001684188.1 DUF957 domain-containing protein -
  A8L39_RS19610 - 3711460..3711948 (-) 489 WP_001684187.1 DUF5983 family protein -
  A8L39_RS19615 cbtA 3711945..3712322 (-) 378 WP_032107687.1 type IV toxin-antitoxin system cytoskeleton-binding toxin CbtA -
  A8L39_RS19620 - 3712412..3712780 (-) 369 WP_033805992.1 type IV toxin-antitoxin system YeeU family antitoxin -
  A8L39_RS19625 - 3712860..3713081 (-) 222 WP_001684649.1 DUF987 domain-containing protein -
  A8L39_RS19630 radC 3713150..3713626 (-) 477 WP_001186745.1 RadC family protein Machinery gene
  A8L39_RS19635 - 3713642..3714121 (-) 480 WP_001684386.1 antirestriction protein -
  A8L39_RS34010 - 3714287..3714460 (-) 174 WP_001684385.1 hypothetical protein -
  A8L39_RS19645 - 3714460..3715278 (-) 819 WP_033805991.1 DUF932 domain-containing protein -
  A8L39_RS34585 - 3715371..3715549 (+) 179 Protein_3780 hypothetical protein -
  A8L39_RS19655 - 3715689..3716102 (-) 414 WP_000789535.1 hypothetical protein -
  A8L39_RS19660 - 3716372..3716911 (-) 540 WP_001104020.1 DUF4339 domain-containing protein -
  A8L39_RS34590 - 3717036..3717209 (-) 174 WP_001370911.1 hypothetical protein -

Sequence

Protein


Download         Length: 158 a.a.        Molecular weight: 17670.27 Da        Isoelectric Point: 6.9859

>NTDB_id=154893 A8L39_RS19630 WP_001186745.1 3713150..3713626(-) (radC) [Escherichia coli O157 strain 180-PT54]
MQQLSFLPGEMTPGERSLIQRALKTLDRHLHEPGVAFTSTHAAREWLILNMAGLEREEFRVLYLNNQNQLIAGETLFTGT
INRTEVHPREVIKRALYHNAAAVVLAHNHPSGEVTPSKADRLITERLVQALALVDIRVPDHLIIGGSQVFSFAEHGLL

Nucleotide


Download         Length: 477 bp        

>NTDB_id=154893 A8L39_RS19630 WP_001186745.1 3713150..3713626(-) (radC) [Escherichia coli O157 strain 180-PT54]
ATGCAACAGCTTTCCTTTCTGCCCGGAGAGATGACGCCCGGCGAGCGCAGCCTCATTCAACGGGCCCTGAAAACCCTGGA
CCGCCATCTTCATGAACCCGGCGTGGCCTTCACCTCCACGCATGCGGCACGGGAATGGCTGATTCTGAACATGGCGGGAC
TGGAGCGTGAAGAATTCCGGGTGCTGTATCTGAATAACCAGAATCAGCTGATTGCCGGTGAAACCCTCTTCACCGGCACC
ATCAACCGCACGGAAGTCCATCCCCGGGAGGTAATTAAACGTGCCCTGTACCACAATGCCGCTGCCGTGGTGCTGGCACA
CAATCACCCGTCCGGTGAAGTCACCCCCAGTAAGGCTGACCGGCTTATCACTGAGCGTCTGGTACAGGCACTGGCTCTGG
TGGATATCCGGGTGCCGGACCATCTGATAATCGGTGGCAGCCAGGTTTTCTCCTTTGCGGAACACGGTCTGCTTTAA

Domains

Predicted by InterProScan.

RadC-like JAB domain (RadC)

(38-157)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radC Haemophilus influenzae Rd KW20

58.654

65.823

0.386