Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   A8L39_RS19215 Genome accession   NZ_CP015832
Coordinates   3615897..3616526 (-) Length   209 a.a.
NCBI ID   WP_000839159.1    Uniprot ID   Q8XD96
Organism   Escherichia coli O157 strain 180-PT54     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 3610897..3621526
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  A8L39_RS19200 helD 3611139..3613193 (-) 2055 WP_001301436.1 DNA helicase IV -
  A8L39_RS19205 yccF 3613316..3613762 (+) 447 WP_001261230.1 YccF domain-containing protein -
  A8L39_RS19210 yccS 3613772..3615934 (+) 2163 WP_000875023.1 YccS family putative transporter -
  A8L39_RS19215 sxy/tfoX 3615897..3616526 (-) 630 WP_000839159.1 CRP-S regulon transcriptional coactivator Sxy Regulator
  A8L39_RS19220 sulA 3616745..3617254 (+) 510 WP_000288710.1 SOS-induced cell division inhibitor SulA -
  A8L39_RS19230 ompA 3617611..3618651 (+) 1041 WP_000750416.1 porin OmpA -
  A8L39_RS19235 matP 3618727..3619179 (-) 453 WP_000877161.1 macrodomain Ter protein MatP -
  A8L39_RS19240 ycbZ 3619365..3621125 (+) 1761 WP_000156526.1 Lon protease family protein -

Sequence

Protein


Download         Length: 209 a.a.        Molecular weight: 24173.05 Da        Isoelectric Point: 9.1942

>NTDB_id=154891 A8L39_RS19215 WP_000839159.1 3615897..3616526(-) (sxy/tfoX) [Escherichia coli O157 strain 180-PT54]
MKSLSYKRIYKSQEYLATLGTIEYRSLFGSYSLTVDDTVFAMVSDGELYLRACEQSAQYCVKYPPVWLTYKKCGRSVTLN
YYRVDESLWRNQLKLVRLSKYSLDAALKEKSTRNTRERLKDLPNMSFHLEAILGEVGIKDVRALRILGAKMCWLRLRQQN
SLVTEKILFMLEGAIIGIHEAALPVARRQELAEWADSLTPKQEFPAELE

Nucleotide


Download         Length: 630 bp        

>NTDB_id=154891 A8L39_RS19215 WP_000839159.1 3615897..3616526(-) (sxy/tfoX) [Escherichia coli O157 strain 180-PT54]
ATGAAAAGCCTCTCCTATAAGCGGATCTATAAATCACAAGAATACCTGGCAACGTTGGGCACAATTGAATACCGATCATT
GTTTGGCAGTTACAGCCTGACCGTTGACGACACGGTGTTTGCGATGGTTTCTGATGGTGAGTTGTATCTTCGGGCTTGTG
AGCAAAGTGCACAGTACTGTGTAAAATATCCGCCTGTCTGGCTGACATATAAAAAGTGTGGCCGATCCGTTACCCTCAAT
TACTATCGGGTTGATGAAAGTCTATGGCGAAATCAACTGAAGCTGGTGCGTCTGTCGAAATATTCTCTCGATGCAGCGCT
GAAAGAGAAAAGCACGCGCAATACCCGGGAAAGACTGAAAGATTTGCCCAATATGTCTTTTCATCTGGAAGCGATTCTCG
GGGAGGTGGGGATTAAGGATGTACGGGCGTTACGTATACTTGGGGCAAAAATGTGTTGGTTGCGACTGCGGCAGCAAAAC
AGTCTGGTGACAGAAAAGATTCTGTTTATGCTTGAAGGTGCCATTATCGGCATTCATGAAGCTGCGCTCCCGGTGGCACG
CCGCCAGGAGCTTGCAGAATGGGCTGACTCTCTTACGCCGAAACAGGAGTTTCCTGCGGAACTTGAGTAA

Domains

Predicted by InterProScan.

TfoX N-terminal domain (TfoX_N)

(14-106)

TfoX C-terminal domain (TfoX_C)

(116-194)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q8XD96

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

99.522

100

0.995