Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   STho1984_RS05315 Genome accession   NZ_CP012513
Coordinates   1129489..1130094 (+) Length   201 a.a.
NCBI ID   WP_001202375.1    Uniprot ID   A0A5I0N148
Organism   Salmonella enterica subsp. enterica serovar Thompson strain RM1984     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 1124489..1135094
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  STho1984_RS05295 (STho1984_1064) - 1124883..1126643 (-) 1761 WP_017465791.1 AAA family ATPase -
  STho1984_RS05300 (STho1984_1065) matP 1126829..1127281 (+) 453 WP_017465792.1 macrodomain Ter protein MatP -
  STho1984_RS05305 (STho1984_1066) ompA 1127353..1128405 (-) 1053 WP_001674965.1 porin OmpA -
  STho1984_RS05310 (STho1984_1067) sulA 1128763..1129272 (-) 510 WP_017465793.1 SOS-induced cell division inhibitor SulA -
  STho1984_RS05315 (STho1984_1068) sxy/tfoX 1129489..1130094 (+) 606 WP_001202375.1 TfoX/Sxy family DNA transformation protein Regulator
  STho1984_RS05320 (STho1984_1069) yccS 1130081..1132234 (-) 2154 WP_000950861.1 YccS family putative transporter -
  STho1984_RS05325 (STho1984_1070) - 1132253..1132699 (-) 447 WP_001261222.1 YccF domain-containing protein -
  STho1984_RS05330 (STho1984_1071) helD 1132823..1134877 (+) 2055 WP_017465794.1 DNA helicase IV -

Sequence

Protein


Download         Length: 201 a.a.        Molecular weight: 23174.94 Da        Isoelectric Point: 8.7403

>NTDB_id=154878 STho1984_RS05315 WP_001202375.1 1129489..1130094(+) (sxy/tfoX) [Salmonella enterica subsp. enterica serovar Thompson strain RM1984]
MRALSYDRIYKSQEYLASLGTIQYRSLFGSYSLTVEDTVFAMVANGELYLRACEESVPYCVKHPPAWLMFMKCGRPVMLN
YYRVDESLWRDQQQLVRLSKYSLDAAMKEKHSRILQHRLKDLPNMTFHLETLLNESGIKDENMLRILGAKMCWLRLRQSN
PLLTVKVLYALEGAIVGVHEAALPASRRQELADWAHSLTAG

Nucleotide


Download         Length: 606 bp        

>NTDB_id=154878 STho1984_RS05315 WP_001202375.1 1129489..1130094(+) (sxy/tfoX) [Salmonella enterica subsp. enterica serovar Thompson strain RM1984]
ATGAGAGCACTCTCTTATGACAGGATCTATAAATCGCAAGAATATTTGGCCTCTTTGGGGACGATCCAGTATCGATCTTT
ATTCGGTAGCTATAGTCTGACCGTGGAGGATACCGTCTTTGCGATGGTGGCTAATGGCGAGCTTTATCTCCGCGCCTGTG
AAGAAAGCGTACCCTACTGTGTGAAGCATCCTCCCGCCTGGCTCATGTTTATGAAATGTGGACGTCCCGTTATGCTCAAC
TATTACCGGGTGGATGAAAGCCTGTGGCGCGATCAGCAGCAGCTGGTACGTTTATCGAAGTATTCTCTTGACGCGGCAAT
GAAGGAAAAACACAGCCGTATTTTACAGCACAGACTCAAAGATCTCCCCAATATGACCTTCCATCTGGAAACATTGCTCA
ATGAGTCAGGGATAAAGGACGAAAATATGTTACGCATACTGGGCGCGAAAATGTGCTGGCTAAGGTTGCGACAAAGCAAT
CCCTTGCTGACGGTGAAAGTTTTGTATGCCCTGGAAGGCGCAATTGTCGGCGTACATGAAGCGGCGCTCCCGGCGAGTCG
TCGCCAGGAGCTTGCCGACTGGGCTCATTCGCTTACGGCTGGGTAA

Domains

Predicted by InterproScan.

TfoX N-terminal domain (TfoX_N)

(14-106)

TfoX C-terminal domain (TfoX_C)

(116-194)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A5I0N148

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

75.879

99.005

0.751

Multiple sequence alignment