Detailed information    

insolico Bioinformatically predicted

Overview

Name   luxS   Type   Regulator
Locus tag   A8L39_RS06255 Genome accession   NZ_CP015832
Coordinates   1217487..1218002 (+) Length   171 a.a.
NCBI ID   WP_001130215.1    Uniprot ID   B5Z2A2
Organism   Escherichia coli O157 strain 180-PT54     
Function   induction of competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 1212487..1223002
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  A8L39_RS06210 csrA 1213304..1213489 (+) 186 WP_000906486.1 carbon storage regulator CsrA -
  A8L39_RS06240 yqaB 1214717..1215283 (+) 567 WP_000273309.1 fructose-1-phosphate/6-phosphogluconate phosphatase -
  A8L39_RS06245 yqaA 1215280..1215708 (+) 429 WP_001287450.1 YqaA family protein -
  A8L39_RS06250 gshA 1215781..1217337 (+) 1557 WP_000611787.1 glutamate--cysteine ligase -
  A8L39_RS06255 luxS 1217487..1218002 (+) 516 WP_001130215.1 S-ribosylhomocysteine lyase Regulator
  A8L39_RS06260 emrB 1218066..1219604 (-) 1539 WP_001295176.1 multidrug efflux MFS transporter permease subunit EmrB -
  A8L39_RS06265 emrA 1219621..1220793 (-) 1173 WP_001302673.1 multidrug efflux MFS transporter periplasmic adaptor subunit EmrA -
  A8L39_RS06270 emrR 1220920..1221450 (-) 531 WP_000378442.1 multidrug efflux transporter EmrAB transcriptional repressor EmrR -
  A8L39_RS06275 ygaH 1221541..1221876 (-) 336 WP_000119749.1 L-valine transporter subunit YgaH -
  A8L39_RS06280 ygaZ 1221866..1222603 (-) 738 WP_000445658.1 L-valine exporter subunit YgaZ -

Sequence

Protein


Download         Length: 171 a.a.        Molecular weight: 19444.24 Da        Isoelectric Point: 5.0362

>NTDB_id=154868 A8L39_RS06255 WP_001130215.1 1217487..1218002(+) (luxS) [Escherichia coli O157 strain 180-PT54]
MPLLDSFTVDHTRMEAPAVRVAKTMNTPHGDAITVFDLRFCVPNKEVMPERGIHTLEHLFAGFMRNHLNGNGVEIIDISP
MGCRTGFYMSLIGTPDEQRVADVWKAAMEDVLKVQDQNQIPELNVYQCGTYQMHSLQEAQDIARSILERDVRINSNEELA
LPKEKLQELHI

Nucleotide


Download         Length: 516 bp        

>NTDB_id=154868 A8L39_RS06255 WP_001130215.1 1217487..1218002(+) (luxS) [Escherichia coli O157 strain 180-PT54]
ATGCCGTTGTTAGATAGCTTCACAGTCGATCATACCCGGATGGAAGCGCCTGCAGTTCGGGTGGCGAAAACAATGAACAC
CCCGCATGGCGACGCAATCACCGTGTTCGATCTGCGCTTCTGCGTGCCGAACAAAGAAGTGATGCCAGAAAGAGGGATCC
ATACCCTGGAGCACCTGTTTGCTGGTTTTATGCGTAACCATCTTAACGGTAATGGTGTAGAGATTATCGATATCTCGCCA
ATGGGCTGCCGCACCGGTTTTTATATGAGTCTGATTGGTACGCCAGATGAGCAGCGTGTTGCTGATGTCTGGAAAGCGGC
AATGGAAGACGTGCTGAAAGTGCAGGATCAGAATCAGATTCCGGAGCTGAACGTCTACCAGTGTGGCACTTACCAGATGC
ACTCGTTGCAGGAAGCGCAGGATATTGCGCGTAGCATTCTGGAACGTGACGTGCGCATCAACAGCAACGAAGAACTGGCG
CTGCCGAAAGAGAAGTTGCAGGAACTGCACATTTAG

Domains

Predicted by InterProScan.

S-Ribosylhomocysteinase (LuxS) (LuxS)

(4-152)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB B5Z2A2

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  luxS Vibrio cholerae strain A1552

72.515

100

0.725