Detailed information NTG0154865

Bioinformatically predicted

Overview

• Name: rpoS
• Type: Regulator
• Locus tag: A8L39_RS05985
• Genome accession: NZ_CP015832
• Coordinates: 1168095..1169087 (+)
• Length: 330 a.a.
• NCBI ID: WP_000081550.1
• Uniprot ID: A0A370V765
• Organism: Escherichia coli O157 strain 180-PT54
• Function: regulation of chitinases (predicted from homology) Competence regulation

Genomic Context

Location: 1163095..1174087

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
A8L39_RS05955	ispD	1163156..1163866 (+)	711	WP_000246158.1	2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase	-
A8L39_RS05960	ispF	1163866..1164345 (+)	480	WP_001219242.1	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase	-
A8L39_RS05965	truD	1164342..1165391 (+)	1050	WP_053920048.1	tRNA pseudouridine(13) synthase TruD	-
A8L39_RS05970	surE	1165372..1166133 (+)	762	WP_001295182.1	5'/3'-nucleotidase SurE	-
A8L39_RS05975	pcm	1166127..1166753 (+)	627	WP_000254708.1	protein-L-isoaspartate O-methyltransferase	-
A8L39_RS05980	nlpD	1166938..1168032 (+)	1095	WP_306256364.1	murein hydrolase activator NlpD	-
A8L39_RS05985	rpoS	1168095..1169087 (+)	993	WP_000081550.1	RNA polymerase sigma factor RpoS	Regulator
A8L39_RS05990	-	1169207..1169614 (-)	408	WP_000175365.1	MarR family transcriptional regulator	-
A8L39_RS05995	-	1169761..1170354 (+)	594	WP_000767724.1	non-oxidative hydroxyarylic acid decarboxylases subunit B	-
A8L39_RS06000	-	1170354..1171781 (+)	1428	WP_000863205.1	non-oxidative hydroxyarylic acid decarboxylases subunit C	-
A8L39_RS06005	-	1171792..1172028 (+)	237	WP_000562982.1	non-oxidative hydroxyarylic acid decarboxylases subunit D	-
A8L39_RS06010	pphB	1172069..1172725 (-)	657	WP_001141350.1	protein-serine/threonine phosphatase	-

Sequence

Protein

• Length: 330 a.a.
• Molecular weight: 37972.84 Da
• Isoelectric Point: 4.5597

>NTDB_id=154865 A8L39_RS05985 WP_000081550.1 1168095..1169087(+) (rpoS) [Escherichia coli O157 strain 180-PT54]
MSQNTLKVHDLNEDAEFDENGVEVFDEKALVEEEPSDNDLAEEELLSQGATQRVLDATQLYLGEIGYSPLLTAEEEVYFA
RRALRGDVASRRRMIESNLRLVVKIARRYGNRGLALLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIERAIMN
QTRTIRLPIHIVKELNVYLRTARELSHKLDHEPSAEEIAEQLDKPVDDVSRMLRLNERITSVDTPLGGDSEKALLDILAD
EKENGPEDTTQDDDMKQSIVKWLFELNAKQREVLARRFGLLGYEAATLEDVGREIGLTRERVRQIQVEGLRRLREILQTQ
GLNIEALFRE

Nucleotide

• Length: 993 bp

>NTDB_id=154865 A8L39_RS05985 WP_000081550.1 1168095..1169087(+) (rpoS) [Escherichia coli O157 strain 180-PT54]
ATGAGTCAGAATACGCTGAAAGTTCATGATTTAAATGAAGATGCGGAATTTGATGAGAACGGAGTTGAGGTTTTTGACGA
AAAGGCCTTAGTAGAAGAGGAACCCAGTGATAACGATTTGGCCGAAGAGGAACTGTTATCGCAGGGAGCCACACAGCGTG
TGTTGGACGCGACTCAGCTTTACCTTGGTGAGATTGGTTATTCACCACTGTTAACGGCCGAAGAAGAAGTTTATTTTGCG
CGTCGCGCACTGCGTGGAGATGTCGCCTCTCGCCGCCGGATGATCGAGAGTAACTTGCGTCTGGTGGTAAAAATTGCCCG
CCGTTATGGCAATCGTGGTCTGGCGTTGCTGGACCTTATCGAAGAGGGCAACCTGGGGCTGATCCGTGCGGTAGAGAAGT
TTGACCCGGAACGTGGTTTCCGCTTCTCAACATACGCAACCTGGTGGATTCGCCAGACGATTGAACGGGCGATTATGAAC
CAAACCCGTACTATTCGTTTGCCGATTCACATCGTAAAGGAGCTGAACGTTTACCTGCGAACCGCACGTGAGTTGTCCCA
TAAGCTGGACCATGAACCAAGTGCGGAAGAGATCGCAGAGCAACTGGATAAGCCAGTTGATGACGTCAGCCGTATGCTTC
GTCTTAACGAGCGCATTACCTCGGTAGACACCCCGCTGGGTGGTGATTCCGAAAAAGCGTTGCTGGACATCCTGGCCGAT
GAAAAAGAGAACGGTCCGGAAGATACCACGCAAGATGACGATATGAAGCAGAGCATCGTCAAATGGCTGTTCGAGCTGAA
CGCCAAACAGCGTGAAGTACTGGCACGTCGATTCGGTTTGCTGGGGTACGAAGCGGCAACACTGGAAGATGTAGGTCGTG
AAATTGGCCTCACCCGTGAACGTGTTCGCCAGATTCAGGTTGAAGGCCTGCGCCGTTTGCGCGAAATCCTGCAAACGCAG
GGGCTGAATATCGAAGCGCTGTTCCGCGAGTAA

Domains

Predicted by InterProScan.

• Sigma-70 region 3 (Sigma70_r3) (174-248)

• Sigma-70 region 2 (Sigma70_r2) (94-163)

• Sigma-70 factor, region 1.2 (Sigma70_r1_2) (56-88)

• Sigma-70, region 4 (Sigma70_r4) (262-315)

3D structure

• AlphaFold DB: A0A370V765

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rpoS	Vibrio cholerae O1 biovar El Tor strain E7946	73.065	97.879	0.715