Detailed information    

insolico Bioinformatically predicted

Overview

Name   radC   Type   Machinery gene
Locus tag   A8L39_RS01120 Genome accession   NZ_CP015832
Coordinates   199312..199980 (+) Length   222 a.a.
NCBI ID   WP_001297375.1    Uniprot ID   P65957
Organism   Escherichia coli O157 strain 180-PT54     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 194312..204980
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  A8L39_RS01090 yicC 194331..195194 (-) 864 WP_000621336.1 YicC/YloC family endoribonuclease -
  A8L39_RS01095 rph 195321..196037 (+) 717 WP_001247093.1 ribonuclease PH -
  A8L39_RS01100 pyrE 196103..196744 (+) 642 WP_000806161.1 orotate phosphoribosyltransferase -
  A8L39_RS01105 slmA 196781..197377 (-) 597 WP_000818601.1 nucleoid occlusion factor SlmA -
  A8L39_RS01110 dut 197484..197942 (-) 459 WP_000976070.1 dUTP diphosphatase -
  A8L39_RS01115 coaBC 197920..199140 (-) 1221 WP_000050139.1 bifunctional phosphopantothenoylcysteine decarboxylase/phosphopantothenate--cysteine ligase CoaBC -
  A8L39_RS01120 radC 199312..199980 (+) 669 WP_001297375.1 DNA repair protein RadC Machinery gene
  A8L39_RS01125 rpmB 200197..200433 (+) 237 WP_000091955.1 50S ribosomal protein L28 -
  A8L39_RS01130 rpmG 200454..200621 (+) 168 WP_001051798.1 50S ribosomal protein L33 -
  A8L39_RS01135 mutM 200719..201528 (+) 810 WP_001114533.1 bifunctional DNA-formamidopyrimidine glycosylase/DNA-(apurinic or apyrimidinic site) lyase -
  A8L39_RS01140 coaD 201567..202046 (-) 480 WP_001171866.1 pantetheine-phosphate adenylyltransferase -
  A8L39_RS01145 waaA 202054..203331 (-) 1278 WP_000891564.1 lipid IV(A) 3-deoxy-D-manno-octulosonic acid transferase -
  A8L39_RS01150 rfaQ 203744..204802 (+) 1059 WP_000360402.1 lipopolysaccharide core heptosyltransferase RfaQ -

Sequence

Protein


Download         Length: 222 a.a.        Molecular weight: 25258.35 Da        Isoelectric Point: 7.9748

>NTDB_id=154848 A8L39_RS01120 WP_001297375.1 199312..199980(+) (radC) [Escherichia coli O157 strain 180-PT54]
MKNNAQLLMPREKMLKFGISALTDVELLALFLRTGTRGKDVLTLAKEMLENFGSLYGLLTSEYEQFSGVHGIGVAKFAQL
KGIAELARRYYNVRMREESPLLSPEMTREFLQSQLTGEEREIFMVIFLDSQHRVITHSRLFSGTLNHVEVHPREIIREAI
KINASALILAHNHPSGCAEPSKADKLITERIIKSCQFMDLRVLDHIVIGRGEYVSFAERGWI

Nucleotide


Download         Length: 669 bp        

>NTDB_id=154848 A8L39_RS01120 WP_001297375.1 199312..199980(+) (radC) [Escherichia coli O157 strain 180-PT54]
GTGAAAAACAATGCACAGCTGTTGATGCCGCGCGAAAAAATGCTGAAGTTTGGTATTAGCGCCTTAACTGATGTCGAGCT
GCTGGCGCTATTTCTGCGTACCGGAACGCGCGGTAAAGATGTATTAACCCTGGCAAAAGAGATGCTGGAGAATTTCGGCT
CTCTTTATGGCTTGTTAACCTCTGAATATGAACAATTTAGTGGTGTTCATGGAATTGGCGTAGCGAAATTTGCCCAGTTA
AAGGGGATTGCTGAACTGGCGCGACGTTACTACAACGTGCGGATGCGTGAAGAAAGCCCTTTACTCAGCCCGGAGATGAC
GCGGGAATTTTTACAAAGCCAGCTCACGGGTGAGGAGCGGGAGATCTTTATGGTGATCTTTCTCGACTCCCAACACCGGG
TTATAACGCATAGCCGTCTTTTTTCCGGCACGCTAAACCATGTTGAAGTCCATCCTCGGGAAATTATCCGCGAAGCGATA
AAAATAAACGCCTCGGCGCTGATCCTTGCACATAATCACCCTTCGGGTTGTGCTGAACCCAGTAAAGCGGATAAACTCAT
TACTGAACGGATAATAAAGAGTTGTCAGTTCATGGATTTACGCGTGCTCGACCATATCGTGATTGGGCGTGGAGAGTATG
TTTCTTTTGCCGAACGCGGCTGGATTTAA

Domains

Predicted by InterProScan.

RadC-like JAB domain (RadC)

(103-220)

UPF0758 N-terminal (UPF0758_N)

(9-77)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB P65957

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radC Haemophilus influenzae Rd KW20

49.55

100

0.496