Detailed information    

insolico Bioinformatically predicted

Overview

Name   vicX   Type   Regulator
Locus tag   AMR84_RS04355 Genome accession   NZ_CP012503
Coordinates   831666..832475 (+) Length   269 a.a.
NCBI ID   WP_001289499.1    Uniprot ID   A0AAD2WV74
Organism   Streptococcus agalactiae strain NGBS357     
Function   require for competence development (predicted from homology)   
Competence regulation

Genomic Context

Location: 826666..837475
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AMR84_RS04330 (AMR84_04345) - 826995..827690 (-) 696 WP_000173640.1 amino acid ABC transporter permease -
  AMR84_RS04335 (AMR84_04350) - 827703..828503 (-) 801 WP_000946171.1 transporter substrate-binding domain-containing protein -
  AMR84_RS04340 (AMR84_04355) - 828515..829270 (-) 756 WP_000053154.1 amino acid ABC transporter ATP-binding protein -
  AMR84_RS04345 (AMR84_04360) vicR 829610..830320 (+) 711 WP_000722052.1 response regulator YycF Regulator
  AMR84_RS04350 (AMR84_04365) vicK 830313..831662 (+) 1350 WP_001065469.1 cell wall metabolism sensor histidine kinase VicK Regulator
  AMR84_RS04355 (AMR84_04370) vicX 831666..832475 (+) 810 WP_001289499.1 MBL fold metallo-hydrolase Regulator
  AMR84_RS04360 (AMR84_04375) - 832478..832846 (+) 369 WP_000719384.1 YbaN family protein -
  AMR84_RS04365 (AMR84_04380) rnc 833022..833708 (+) 687 WP_000661526.1 ribonuclease III -
  AMR84_RS04370 (AMR84_04385) smc 833716..837255 (+) 3540 WP_000478794.1 chromosome segregation protein SMC -

Sequence

Protein


Download         Length: 269 a.a.        Molecular weight: 30246.18 Da        Isoelectric Point: 6.0756

>NTDB_id=154792 AMR84_RS04355 WP_001289499.1 831666..832475(+) (vicX) [Streptococcus agalactiae strain NGBS357]
MSEIGFKYSILASGSTGNCFYIETPQKRLLIDAGLTGKKVTSLLAEINRKPEDLDAILVTHEHSDHIKGVGVLARKYHLD
IYANEQTWKVMDERNMLGKVDVSQKHVFGRGTTLTFGDLDIESFGVSHDAVDPQFYRMMKDDKSFVMLTDTGYVSDRMAS
LIENADGYLIESNHDIEILRSGSYPWTLKQRILSDKGHLSNEDGSETMIRTIGNRTKHIYLGHLSKENNIKELAHMTMEN
NLMRADFGVGTDFSVHDTSPDSATPLTRI

Nucleotide


Download         Length: 810 bp        

>NTDB_id=154792 AMR84_RS04355 WP_001289499.1 831666..832475(+) (vicX) [Streptococcus agalactiae strain NGBS357]
ATGTCAGAAATAGGATTTAAATATAGTATCTTAGCTTCAGGTTCAACTGGAAATTGTTTTTATATTGAGACACCCCAAAA
ACGTCTTTTAATCGATGCTGGTTTAACAGGCAAGAAAGTGACTAGCCTTCTTGCAGAAATTAATCGTAAGCCAGAAGATT
TAGATGCTATACTAGTTACCCACGAACATTCTGACCACATTAAAGGTGTTGGCGTATTGGCTAGGAAATATCACCTTGAT
ATTTATGCTAATGAGCAGACGTGGAAAGTTATGGATGAGCGTAACATGTTAGGCAAAGTTGATGTTAGTCAAAAGCATGT
TTTTGGACGCGGTACAACCTTAACTTTCGGGGATTTAGATATTGAGAGCTTTGGTGTAAGTCATGATGCTGTGGATCCCC
AATTTTACCGTATGATGAAAGATGATAAGAGCTTTGTGATGTTGACAGATACAGGATATGTTAGCGACCGAATGGCAAGC
TTGATTGAGAATGCAGATGGTTATTTGATCGAGTCAAATCACGACATTGAGATTCTACGTTCGGGTTCTTATCCTTGGAC
ACTTAAGCAACGTATTTTATCAGATAAAGGACATTTATCTAATGAAGATGGTTCAGAAACCATGATTCGCACTATAGGTA
ACCGTACTAAACACATCTATTTAGGACACTTGAGTAAGGAAAATAATATTAAGGAACTTGCTCACATGACTATGGAAAAC
AATTTAATGAGAGCTGACTTTGGTGTGGGCACAGATTTTTCTGTTCACGATACTTCCCCTGATTCAGCTACCCCACTGAC
GAGGATTTAA

Domains

Predicted by InterproScan.

Beta-lactamase superfamily domain (Lactamase_B_2)

(28-204)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  vicX Streptococcus mutans UA159

76.208

100

0.762

Multiple sequence alignment