Detailed information    

insolico Bioinformatically predicted

Overview

Name   radC   Type   Machinery gene
Locus tag   A8L40_RS00760 Genome accession   NZ_CP015831
Coordinates   136540..137016 (-) Length   158 a.a.
NCBI ID   WP_001535682.1    Uniprot ID   -
Organism   Escherichia coli O157 strain 644-PT8     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 131540..142016
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  A8L40_RS00715 tnpB 132652..132999 (-) 348 WP_000612591.1 IS66 family insertion sequence element accessory protein TnpB -
  A8L40_RS00720 - 132996..133376 (-) 381 WP_001171554.1 transposase -
  A8L40_RS00725 - 133660..134505 (-) 846 WP_001274561.1 DUF4942 domain-containing protein -
  A8L40_RS00730 - 134590..134787 (-) 198 WP_000772032.1 DUF957 domain-containing protein -
  A8L40_RS00735 - 134807..135295 (-) 489 WP_053920163.1 DUF5983 family protein -
  A8L40_RS00740 - 135292..135669 (-) 378 WP_001094437.1 TA system toxin CbtA family protein -
  A8L40_RS00745 - 135716..136093 (-) 378 WP_001390338.1 type IV toxin-antitoxin system YeeU family antitoxin -
  A8L40_RS00755 - 136256..136477 (-) 222 WP_000692345.1 DUF987 domain-containing protein -
  A8L40_RS00760 radC 136540..137016 (-) 477 WP_001535682.1 RadC family protein Machinery gene
  A8L40_RS00765 - 137032..137505 (-) 474 WP_000855064.1 antirestriction protein -
  A8L40_RS00775 - 137847..138665 (-) 819 WP_001535681.1 DUF932 domain-containing protein -
  A8L40_RS00780 - 138783..138978 (-) 196 Protein_148 DUF905 family protein -
  A8L40_RS00785 - 139049..141895 (-) 2847 WP_000820574.1 Ag43/Cah family autotransporter adhesin -

Sequence

Protein


Download         Length: 158 a.a.        Molecular weight: 17640.20 Da        Isoelectric Point: 6.9240

>NTDB_id=154765 A8L40_RS00760 WP_001535682.1 136540..137016(-) (radC) [Escherichia coli O157 strain 644-PT8]
MQQLSFLPGEMTPGERSLIQRALKTLDRHLHEPGVAFTSTHAAREWLILNMAGLEREEFRVLYLNNQNQLIAGETLFTGT
INRTEVHPREVIKRALYHNAAAVVLAHNHPSGEVTPSKADRLITERLAQALGLVDIRVPDHLIVGGSQVFSFAEYGLL

Nucleotide


Download         Length: 477 bp        

>NTDB_id=154765 A8L40_RS00760 WP_001535682.1 136540..137016(-) (radC) [Escherichia coli O157 strain 644-PT8]
ATGCAACAGCTTTCCTTTCTGCCCGGAGAGATGACGCCCGGCGAGCGCAGCCTCATTCAACGGGCCCTGAAAACCCTGGA
CCGCCATCTTCATGAACCCGGCGTGGCCTTCACCTCCACGCATGCGGCACGGGAATGGCTGATTCTGAACATGGCGGGAC
TGGAGCGTGAAGAATTCCGGGTGCTGTATCTGAATAACCAGAATCAGCTGATTGCCGGTGAAACCCTCTTCACCGGCACC
ATCAACCGCACGGAAGTCCATCCCCGTGAAGTGATTAAACGCGCCCTGTATCACAATGCCGCTGCTGTGGTGCTGGCACA
CAATCACCCGTCCGGTGAAGTCACACCCAGCAAGGCAGACCGCCTTATCACGGAACGTCTGGCACAGGCACTGGGCCTGG
TGGATATCCGGGTGCCGGACCATCTGATAGTCGGTGGCAGCCAGGTTTTCTCCTTTGCCGAATATGGTCTGCTTTAA

Domains

Predicted by InterProScan.

RadC-like JAB domain (RadC)

(38-156)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radC Haemophilus influenzae Rd KW20

55.752

71.519

0.399

Multiple sequence alignment