Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   BBEV_RS16465 Genome accession   NZ_CP012502
Coordinates   3476338..3477750 (-) Length   470 a.a.
NCBI ID   WP_069366457.1    Uniprot ID   A0A1D7QZZ8
Organism   Salisediminibacterium beveridgei strain MLTeJB     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 3471338..3482750
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BBEV_RS16445 (BBEV_3272) ispF 3472812..3473291 (-) 480 WP_069366804.1 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase -
  BBEV_RS16450 (BBEV_3273) ispD 3473291..3473983 (-) 693 WP_069366454.1 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase -
  BBEV_RS16455 (BBEV_3274) - 3474018..3475115 (-) 1098 WP_069366455.1 PIN/TRAM domain-containing protein -
  BBEV_RS16460 (BBEV_3275) disA 3475281..3476363 (-) 1083 WP_069366456.1 DNA integrity scanning diadenylate cyclase DisA -
  BBEV_RS16465 (BBEV_3276) radA 3476338..3477750 (-) 1413 WP_069366457.1 DNA repair protein RadA Machinery gene
  BBEV_RS16470 (BBEV_3277) clpC 3477838..3480285 (-) 2448 WP_069366458.1 ATP-dependent protease ATP-binding subunit ClpC -
  BBEV_RS16475 (BBEV_3278) - 3480282..3481379 (-) 1098 WP_069366459.1 protein arginine kinase -
  BBEV_RS16480 (BBEV_3279) - 3481381..3481935 (-) 555 WP_069366460.1 UvrB/UvrC motif-containing protein -
  BBEV_RS16485 (BBEV_3280) - 3481954..3482430 (-) 477 WP_069366461.1 CtsR family transcriptional regulator -

Sequence

Protein


Download         Length: 470 a.a.        Molecular weight: 51125.42 Da        Isoelectric Point: 6.5072

>NTDB_id=154760 BBEV_RS16465 WP_069366457.1 3476338..3477750(-) (radA) [Salisediminibacterium beveridgei strain MLTeJB]
MAKKKTKFTCQECGYESAKWMGKCPGCQEFNTMVEEVEKDASSAHEKRSFVPAGGGVRQKPQSIMDIQQNEENRVSTYIN
ELNRVLGGGIVPGSIVLVGGDPGIGKSTLLLQVSATLSENRKTVLYISGEESLKQTKLRANRLDVGNDHLFVHAETDVEH
IEQAIEHVQPDLVIIDSIQTVYLDHITSAPGSVSQVRECTSVFMRIAKTKGIAIFLVGHVTKQGSIAGPRILEHMVDCVL
YFEGERHHAYRILRAVKNRFGSTNEIGIFEMKETGLVEVLNPSEIFLEERSSGASGSAVVASMEGTRPVLVEIQSLIAPT
SFGNPRRMATGVDHNRISLIMAVLEKRAGILLQNHDAYVKVAGGVRLDEPSIDLSIAISIVSSFRDTATKPGDVIIGEVG
LTGEIRRVSRIEQRVQEAAKLGFERAIIPGKNIGGWTFPDGIEVKGVQNISEAIDESLGGRASGAPKFEL

Nucleotide


Download         Length: 1413 bp        

>NTDB_id=154760 BBEV_RS16465 WP_069366457.1 3476338..3477750(-) (radA) [Salisediminibacterium beveridgei strain MLTeJB]
ATGGCCAAGAAAAAAACGAAGTTTACCTGTCAGGAATGTGGATATGAATCAGCAAAATGGATGGGAAAGTGTCCTGGATG
TCAGGAATTCAACACAATGGTGGAGGAAGTGGAAAAAGACGCGTCATCAGCCCATGAAAAACGCAGCTTTGTTCCCGCCG
GTGGCGGCGTCCGGCAGAAACCGCAGTCGATTATGGACATCCAGCAAAACGAAGAAAACCGGGTATCGACCTACATCAAT
GAACTGAACCGGGTTCTCGGCGGCGGCATTGTCCCGGGATCCATTGTTTTAGTGGGGGGGGATCCGGGTATTGGAAAATC
AACACTGTTGTTACAAGTATCGGCAACCTTATCTGAAAATCGAAAAACGGTCCTCTATATCTCCGGGGAAGAATCACTGA
AGCAGACGAAACTGAGAGCCAATCGCCTCGATGTTGGCAATGATCATTTGTTTGTCCATGCGGAAACCGATGTGGAGCAT
ATCGAACAGGCCATTGAACACGTGCAGCCGGATCTTGTGATCATTGATTCCATCCAGACGGTTTACCTGGATCACATCAC
CAGCGCGCCGGGCAGCGTATCACAGGTCCGGGAATGTACATCGGTCTTTATGCGCATTGCGAAAACAAAGGGGATTGCGA
TTTTTCTCGTCGGTCACGTGACCAAGCAGGGCTCGATTGCCGGTCCCCGTATTCTTGAACATATGGTTGACTGTGTTCTT
TACTTTGAAGGAGAACGACACCATGCCTACCGGATTCTCCGGGCCGTTAAGAACCGTTTCGGTTCAACAAACGAGATCGG
GATCTTCGAGATGAAAGAGACGGGTCTAGTTGAAGTACTCAACCCGTCAGAGATCTTTCTTGAAGAACGCTCATCCGGCG
CTTCCGGTTCAGCAGTGGTGGCGTCGATGGAAGGTACCCGCCCGGTCCTGGTTGAGATCCAGTCACTGATTGCGCCAACG
AGCTTCGGAAACCCGCGGAGAATGGCAACAGGCGTCGATCATAACCGGATTTCCCTGATCATGGCTGTGCTCGAGAAACG
GGCGGGCATACTCCTTCAAAATCATGATGCGTATGTTAAAGTGGCAGGGGGCGTCCGGCTCGATGAGCCCTCCATTGACC
TTTCCATTGCGATTTCCATCGTATCCAGCTTTCGGGATACGGCGACGAAACCGGGAGATGTCATCATCGGTGAAGTGGGC
CTGACCGGGGAGATTCGCCGCGTGTCCCGCATTGAACAAAGGGTACAGGAAGCAGCTAAGCTCGGTTTTGAACGGGCGAT
TATACCAGGCAAAAATATCGGCGGCTGGACGTTTCCTGACGGCATCGAGGTCAAAGGTGTCCAGAACATTTCAGAAGCGA
TAGATGAATCATTAGGAGGACGAGCCAGTGGAGCACCTAAATTTGAGCTCTGA

Domains

Predicted by InterproScan.

Subunit ChlI of Mg-chelatase (ChlI)

(365-432)

AAA domain (AAA_25)

(70-224)

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(8-35)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A1D7QZZ8

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Bacillus subtilis subsp. subtilis str. 168

71.304

97.872

0.698
  radA Streptococcus pneumoniae Rx1

58.333

97.021

0.566
  radA Streptococcus pneumoniae D39

58.333

97.021

0.566
  radA Streptococcus pneumoniae R6

58.333

97.021

0.566
  radA Streptococcus pneumoniae TIGR4

58.333

97.021

0.566
  radA Streptococcus mitis NCTC 12261

58.333

97.021

0.566
  radA Streptococcus mitis SK321

58.333

97.021

0.566

Multiple sequence alignment