Detailed information    

insolico Bioinformatically predicted

Overview

Name   recD2   Type   Machinery gene
Locus tag   BBEV_RS05665 Genome accession   NZ_CP012502
Coordinates   1245758..1248046 (+) Length   762 a.a.
NCBI ID   WP_069364583.1    Uniprot ID   -
Organism   Salisediminibacterium beveridgei strain MLTeJB     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1240758..1253046
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BBEV_RS05640 (BBEV_1128) - 1241664..1242287 (+) 624 WP_069364579.1 YitT family protein -
  BBEV_RS05645 (BBEV_1129) cymR 1242271..1242690 (+) 420 WP_069364580.1 cysteine metabolism transcriptional regulator CymR -
  BBEV_RS05650 (BBEV_1130) - 1242735..1243883 (+) 1149 WP_069364581.1 cysteine desulfurase family protein -
  BBEV_RS05655 (BBEV_1131) mnmA 1243902..1245011 (+) 1110 WP_198155069.1 tRNA 2-thiouridine(34) synthase MnmA -
  BBEV_RS05660 (BBEV_1132) - 1245018..1245710 (+) 693 WP_069364582.1 tetratricopeptide repeat protein -
  BBEV_RS05665 (BBEV_1133) recD2 1245758..1248046 (+) 2289 WP_069364583.1 ATP-dependent RecD-like DNA helicase Machinery gene
  BBEV_RS05670 (BBEV_1135) alaS 1248453..1251086 (+) 2634 WP_069364584.1 alanine--tRNA ligase -
  BBEV_RS05675 (BBEV_1136) - 1251208..1251480 (+) 273 WP_069364585.1 IreB family regulatory phosphoprotein -
  BBEV_RS05680 (BBEV_1137) ruvX 1251477..1251893 (+) 417 WP_069364586.1 Holliday junction resolvase RuvX -
  BBEV_RS05685 (BBEV_1138) - 1251931..1252236 (+) 306 WP_069364587.1 DUF1292 domain-containing protein -

Sequence

Protein


Download         Length: 762 a.a.        Molecular weight: 85779.09 Da        Isoelectric Point: 4.6902

>NTDB_id=154749 BBEV_RS05665 WP_069364583.1 1245758..1248046(+) (recD2) [Salisediminibacterium beveridgei strain MLTeJB]
MVDETNLEQEFIQGELIQQIFHAPDSLYTVAKFKVKKSSETIEERDLTVVGMMKPPENDMTYRFEGRMTEHPVYGPQFKF
DRYETVLPETKEGIILYLSSERFEGIGRKTAESIVKVLGETAISKILENKKVLDDVPGMNQKKAAILVDQLREDQGIEVI
LTKLYEYGFGVKMALKVYQTYQEAAVEKMEKNPYELVEDVEGIGFQKADQIGRKQGLTANHPDRLKAGILFTLQEETFSN
GHTYIEDQELIRLADQLLSQGVSEAIDVDLLARQLLELEEEDKLRQEDGRFFMPSLYHAERGIVTHLDRLINRMDEVDTF
PEAEIYKALGEVEEELGITYADSQREAVIQGLHSPVMILTGGPGTGKTTVIKGIVNVYGKLKGQSVIPEEYGKNDAPFPI
VMAAPTGRAAKRMTESTQLPASTIHRLLGYKGEKEGYFEKDDEDPIDGEVLIIDEVSMVDTWLMNQLLKATPTWMQVIFV
GDEDQLPSVGPGQVLEDMLASGAVSSVKLVEIFRQAEGSKIIEFSHQIKQEQLPQGGIDKENKDLRFFPCQVSGVQDTVK
QVCLGAIKKGFRASDIQVLAPMYKGDAGVNLLNDMLQELFNPPSEKVKEVRFGDAVYRVGDMVLQLINDPENNVFNGDRG
EIVAIMTEKETADKMMRITISFNGEEVDYLRNELNAITLAYCCSIHKSQGSEFPIVVMPVVRSYWRMLRKKLIYTGVTRA
SAYLILCGEWSALEKAVVTGEESPRRTTLKERLQKSVSKNRS

Nucleotide


Download         Length: 2289 bp        

>NTDB_id=154749 BBEV_RS05665 WP_069364583.1 1245758..1248046(+) (recD2) [Salisediminibacterium beveridgei strain MLTeJB]
ATGGTCGATGAAACCAATCTCGAACAGGAATTCATTCAAGGAGAACTGATCCAGCAGATTTTTCATGCGCCGGACTCTCT
TTATACAGTGGCCAAATTCAAAGTCAAGAAATCCAGTGAGACGATTGAAGAGAGAGACTTGACGGTTGTCGGGATGATGA
AACCGCCTGAGAACGATATGACATACCGTTTTGAAGGCCGGATGACCGAACATCCGGTCTATGGACCGCAGTTCAAATTC
GACAGATACGAAACGGTTCTTCCGGAAACAAAAGAAGGGATCATTTTGTATCTGTCGAGCGAACGTTTTGAAGGAATCGG
GCGTAAAACAGCGGAATCCATTGTGAAAGTCCTTGGTGAAACTGCGATTTCCAAAATCCTTGAGAATAAAAAAGTGCTCG
ATGATGTGCCTGGGATGAATCAGAAAAAAGCTGCGATTCTCGTGGATCAACTTCGCGAAGATCAGGGGATTGAGGTCATA
CTCACCAAACTCTATGAGTACGGATTCGGTGTGAAAATGGCATTGAAAGTGTACCAGACCTACCAGGAGGCTGCCGTTGA
AAAGATGGAGAAAAATCCGTATGAACTCGTGGAAGATGTAGAGGGAATCGGATTTCAAAAGGCAGATCAGATCGGGCGCA
AACAAGGCTTAACTGCCAATCATCCGGACCGTTTAAAAGCAGGGATTCTCTTCACACTTCAGGAAGAGACTTTTTCAAAC
GGCCATACCTATATCGAAGATCAGGAATTAATACGTTTGGCTGATCAATTGCTTTCTCAGGGTGTGAGTGAGGCGATTGA
CGTTGATCTGCTTGCCCGCCAGCTTTTGGAGCTCGAAGAAGAAGATAAGTTACGTCAAGAAGACGGACGTTTTTTTATGC
CGTCCTTGTATCATGCTGAGCGCGGGATCGTCACCCACCTCGATCGACTGATTAACCGGATGGATGAAGTCGATACATTT
CCGGAAGCGGAAATCTATAAAGCGTTAGGCGAAGTGGAAGAAGAACTCGGCATCACGTATGCAGATTCTCAGCGTGAAGC
TGTGATTCAAGGGCTGCATTCACCGGTGATGATTTTAACAGGCGGACCCGGAACGGGGAAGACCACCGTGATCAAGGGGA
TTGTCAACGTCTATGGAAAGCTGAAAGGACAATCCGTAATACCGGAGGAGTACGGCAAAAATGATGCACCGTTCCCGATT
GTGATGGCGGCACCAACTGGCCGTGCTGCGAAACGAATGACTGAATCGACACAGCTTCCGGCTTCAACCATTCATCGACT
CCTTGGTTACAAAGGCGAGAAGGAAGGGTACTTTGAAAAAGATGATGAGGATCCGATCGACGGGGAAGTACTGATCATTG
ATGAAGTGTCGATGGTGGATACCTGGCTCATGAATCAGCTGCTAAAAGCAACACCAACCTGGATGCAGGTGATTTTCGTC
GGGGATGAAGATCAACTGCCGAGTGTCGGGCCAGGGCAGGTCCTCGAGGATATGCTTGCCTCTGGTGCTGTATCAAGTGT
GAAACTGGTGGAAATTTTTCGACAGGCGGAAGGATCCAAGATCATTGAATTTTCTCATCAGATTAAACAGGAACAGCTTC
CCCAAGGTGGAATAGACAAAGAAAACAAAGACCTCCGCTTCTTCCCTTGCCAGGTATCCGGTGTTCAAGATACTGTGAAG
CAGGTGTGCCTGGGTGCGATCAAGAAAGGATTTCGGGCGAGTGATATTCAGGTTCTTGCCCCGATGTATAAAGGGGATGC
AGGTGTCAATCTGTTGAATGACATGCTTCAGGAACTTTTTAATCCTCCGTCTGAAAAGGTGAAGGAAGTCCGTTTCGGGG
ATGCCGTGTACCGTGTTGGGGATATGGTCCTGCAACTGATCAATGATCCTGAGAACAATGTGTTCAACGGGGACAGAGGT
GAAATTGTCGCGATCATGACGGAGAAAGAAACAGCCGATAAAATGATGCGCATCACCATTTCGTTTAACGGTGAAGAAGT
GGACTACCTCAGAAATGAGTTGAACGCCATTACGCTGGCTTATTGCTGTTCCATACATAAATCACAGGGGAGTGAGTTTC
CCATCGTCGTGATGCCGGTTGTCAGAAGCTACTGGCGGATGCTGCGGAAAAAATTAATTTATACCGGGGTCACCCGCGCA
TCCGCGTATCTGATTTTGTGCGGTGAATGGTCGGCGCTTGAGAAAGCAGTCGTGACCGGTGAAGAATCACCGAGGCGCAC
GACCTTGAAAGAGCGACTTCAAAAATCGGTTTCTAAAAACCGCTCCTGA

Domains

Predicted by InterproScan.

AAA domain (AAA_30)

(340-534)

UvrD-like helicase C-terminal domain (UvrD_C_2)

(680-727)

Helix-hairpin-helix containing domain (HHH_RecD2)

(154-244)

ATP-dependent RecD-like DNA helicase SH3 domain (SH3_13)

(592-650)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recD2 Bacillus subtilis subsp. subtilis str. 168

51.055

99.475

0.508

Multiple sequence alignment