Detailed information    

insolico Bioinformatically predicted

Overview

Name   sinR   Type   Regulator
Locus tag   ACN91_RS21440 Genome accession   NZ_CP012483
Coordinates   4204268..4204591 (+) Length   107 a.a.
NCBI ID   WP_000578885.1    Uniprot ID   A0A9W5VG71
Organism   Bacillus cereus strain NJ-W     
Function   repression of rok; repression of degU; repression of spo0A (predicted from homology)   
Competence regulation

Genomic Context

Location: 4199268..4209591
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACN91_RS21425 (ACN91_21455) - 4199785..4201152 (-) 1368 WP_053564951.1 aldehyde dehydrogenase -
  ACN91_RS21430 (ACN91_21460) inhA1 4201324..4203711 (-) 2388 WP_053564952.1 M6 family metalloprotease immune inhibitor InhA1 -
  ACN91_RS21435 (ACN91_21465) - 4204054..4204188 (+) 135 WP_000276219.1 anti-repressor SinI family protein -
  ACN91_RS21440 (ACN91_21470) sinR 4204268..4204591 (+) 324 WP_000578885.1 helix-turn-helix domain-containing protein Regulator
  ACN91_RS21445 (ACN91_21475) calY 4204664..4205257 (-) 594 WP_053564953.1 biofilm matrix protein CalY -
  ACN91_RS21450 (ACN91_21480) - 4205643..4206413 (-) 771 WP_053564954.1 DUF4047 domain-containing protein -
  ACN91_RS21455 (ACN91_21485) - 4206548..4207135 (-) 588 WP_000172852.1 CalY family protein -
  ACN91_RS21460 (ACN91_21490) - 4207200..4207769 (-) 570 WP_000767792.1 signal peptidase I -
  ACN91_RS21465 (ACN91_21495) - 4207961..4209247 (-) 1287 WP_053564955.1 D-alanyl-D-alanine carboxypeptidase family protein -

Sequence

Protein


Download         Length: 107 a.a.        Molecular weight: 12349.19 Da        Isoelectric Point: 9.6244

>NTDB_id=154716 ACN91_RS21440 WP_000578885.1 4204268..4204591(+) (sinR) [Bacillus cereus strain NJ-W]
MIGERIKRLRLQKGISLTELAEKAGVAKSYISSIERNLQKNPSIQFLEKIAAVLQIPVDTLLHDETTKETNLDSEWTQLV
KDAMNSGVSKEQFREFLEFTKWKQNQK

Nucleotide


Download         Length: 324 bp        

>NTDB_id=154716 ACN91_RS21440 WP_000578885.1 4204268..4204591(+) (sinR) [Bacillus cereus strain NJ-W]
ATGATTGGAGAACGTATAAAACGCCTTCGTTTACAAAAAGGGATTTCATTAACTGAACTTGCCGAAAAAGCTGGCGTTGC
TAAATCTTACATTAGTTCTATAGAACGAAATTTACAAAAAAACCCTTCCATTCAGTTTCTTGAAAAAATCGCAGCAGTTC
TACAAATTCCAGTTGATACTTTACTTCATGATGAAACAACAAAGGAAACTAACCTAGACTCCGAATGGACACAACTCGTT
AAAGATGCAATGAACTCTGGTGTCTCCAAAGAACAATTTCGTGAATTTCTTGAATTTACAAAGTGGAAGCAAAATCAAAA
ATAA

Domains

Predicted by InterproScan.

Helix-turn-helix (HTH_3)

(6-60)

Anti-repressor SinI (SinI)

(72-99)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sinR Bacillus subtilis subsp. subtilis str. 168

67.89

100

0.692

Multiple sequence alignment