Detailed information    

insolico Bioinformatically predicted

Overview

Name   ruvA   Type   Machinery gene
Locus tag   FORC39_RS06525 Genome accession   NZ_CP015817
Coordinates   1238319..1238921 (+) Length   200 a.a.
NCBI ID   WP_000271547.1    Uniprot ID   Q2YT88
Organism   Staphylococcus aureus strain FORC_039     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1233319..1243921
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FORC39_RS06495 (FORC39_1119) mreD 1234043..1234573 (+) 531 WP_001259925.1 rod shape-determining protein MreD -
  FORC39_RS06500 (FORC39_1120) rplU 1234866..1235174 (+) 309 WP_000457386.1 50S ribosomal protein L21 -
  FORC39_RS06505 (FORC39_1121) - 1235180..1235500 (+) 321 WP_000633692.1 ribosomal-processing cysteine protease Prp -
  FORC39_RS06510 (FORC39_1122) rpmA 1235512..1235796 (+) 285 WP_000916187.1 50S ribosomal protein L27 -
  FORC39_RS06515 (FORC39_1123) obgE 1236545..1237837 (+) 1293 WP_000496100.1 GTPase ObgE -
  FORC39_RS06520 (FORC39_1124) - 1237850..1238305 (+) 456 WP_000368902.1 ACT domain-containing protein -
  FORC39_RS06525 (FORC39_1125) ruvA 1238319..1238921 (+) 603 WP_000271547.1 Holliday junction branch migration protein RuvA Machinery gene
  FORC39_RS06530 (FORC39_1126) ruvB 1238953..1239957 (+) 1005 WP_001005768.1 Holliday junction branch migration DNA helicase RuvB Machinery gene
  FORC39_RS06535 (FORC39_1127) queA 1239959..1240984 (+) 1026 WP_086353416.1 tRNA preQ1(34) S-adenosylmethionine ribosyltransferase-isomerase QueA -
  FORC39_RS06540 (FORC39_1128) tgt 1241007..1242146 (+) 1140 WP_001112045.1 tRNA guanosine(34) transglycosylase Tgt -
  FORC39_RS06545 (FORC39_1129) yajC 1242165..1242425 (+) 261 WP_001160682.1 preprotein translocase subunit YajC -

Sequence

Protein


Download         Length: 200 a.a.        Molecular weight: 22262.46 Da        Isoelectric Point: 6.0240

>NTDB_id=154704 FORC39_RS06525 WP_000271547.1 1238319..1238921(+) (ruvA) [Staphylococcus aureus strain FORC_039]
MYAYVKGKLTHLYPTHVVVETAGVGYEIQTPNSYRFQKHLDHEVLIHTSLIVREDAQLLYGFSSEEEKDMFLSLIKVTGI
GPKSALAILATSTPNEVKRAIENENDTYLTKFPGIGKKTARQIVLDLKGKVKITEEDSDSLLQVDATSTVQDQFVQEAML
ALEALGYSKRELAKVEKTLNKNKYDSVDEAVKAGLQLVVS

Nucleotide


Download         Length: 603 bp        

>NTDB_id=154704 FORC39_RS06525 WP_000271547.1 1238319..1238921(+) (ruvA) [Staphylococcus aureus strain FORC_039]
ATGTACGCGTATGTCAAAGGTAAGTTAACACATTTATATCCTACACACGTAGTTGTTGAAACTGCTGGTGTTGGTTATGA
AATTCAAACACCAAATTCTTATCGTTTTCAAAAGCATCTAGATCATGAAGTTTTAATTCATACATCTTTAATTGTTCGTG
AAGATGCACAATTATTGTATGGATTTAGTAGTGAAGAAGAGAAAGATATGTTCTTGAGTTTAATTAAAGTTACTGGTATT
GGTCCGAAATCAGCTTTAGCTATTTTAGCGACAAGTACGCCTAATGAAGTAAAACGTGCCATTGAAAATGAAAATGATAC
GTATTTAACTAAATTCCCAGGAATTGGTAAGAAAACGGCAAGACAGATTGTCTTAGATTTAAAAGGTAAAGTGAAAATCA
CTGAAGAAGATAGCGATTCATTATTACAAGTAGACGCTACTTCGACGGTGCAAGATCAATTCGTGCAAGAAGCAATGTTA
GCGTTAGAAGCATTAGGTTATTCTAAACGAGAGCTTGCAAAAGTTGAGAAAACGTTAAATAAAAATAAATATGACTCAGT
TGATGAAGCTGTTAAGGCAGGTCTTCAATTAGTTGTATCTTAA

Domains

Predicted by InterProScan.

Helix-hairpin-helix domain (HHH_5)

(71-128)

RuvA, C-terminal domain (RuvA_C)

(156-197)

RuvA N terminal domain (RuvA_N)

(1-61)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q2YT88

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ruvA Streptococcus pneumoniae TIGR4

46.231

99.5

0.46
  ruvA Streptococcus pneumoniae R6

45.729

99.5

0.455
  ruvA Streptococcus pneumoniae D39

45.729

99.5

0.455
  ruvA Bacillus subtilis subsp. subtilis str. 168

42.714

99.5

0.425

Multiple sequence alignment