Detailed information    

insolico Bioinformatically predicted

Overview

Name   recF   Type   Machinery gene
Locus tag   ACN91_RS00415 Genome accession   NZ_CP012483
Coordinates   77753..78880 (-) Length   375 a.a.
NCBI ID   WP_053563257.1    Uniprot ID   A0A9X7GI87
Organism   Bacillus cereus strain NJ-W     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 72753..83880
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACN91_RS00405 (ACN91_00405) gyrA 73231..75702 (-) 2472 WP_001282866.1 DNA gyrase subunit A -
  ACN91_RS00410 (ACN91_00410) gyrB 75791..77713 (-) 1923 WP_000435980.1 DNA topoisomerase (ATP-hydrolyzing) subunit B -
  ACN91_RS00415 (ACN91_00415) recF 77753..78880 (-) 1128 WP_053563257.1 DNA replication/repair protein RecF Machinery gene
  ACN91_RS00420 (ACN91_00420) yaaA 78893..79105 (-) 213 WP_000680510.1 S4 domain-containing protein YaaA -
  ACN91_RS00425 (ACN91_00425) dnaN 79233..80378 (-) 1146 WP_001212886.1 DNA polymerase III subunit beta -
  ACN91_RS00430 (ACN91_00430) dnaA 80558..81898 (-) 1341 WP_000428028.1 chromosomal replication initiator protein DnaA -
  ACN91_RS00435 (ACN91_00435) rpmH 82463..82597 (+) 135 WP_000831901.1 50S ribosomal protein L34 -
  ACN91_RS00440 (ACN91_00440) rnpA 82674..83021 (+) 348 WP_000726621.1 ribonuclease P protein component -
  ACN91_RS00445 (ACN91_00445) spoIIIJ 83074..83841 (+) 768 WP_000727740.1 YidC family membrane integrase SpoIIIJ -

Sequence

Protein


Download         Length: 375 a.a.        Molecular weight: 43290.56 Da        Isoelectric Point: 6.5996

>NTDB_id=154685 ACN91_RS00415 WP_053563257.1 77753..78880(-) (recF) [Bacillus cereus strain NJ-W]
MFISEIQLNNYRNYEKLELSFEDKVNVIIGENAQGKTNLMEAIYVLAMAKSHRTSNDRELIRWDEEFGQIKGKLQKRNSS
LSLELNISKKGKKAKLNQLEQQKLSQYIGVMNVVMFAPEDLNLVKGSPQVRRRFLDMELGQIAPVYLYELSQYQKVLTQR
NHLLKKMQGNSKNEETMLDVFTLQLIEHGAKILQKRFEFLHLLQEWAAPIHRGISRGLEELEIVYKPSVDVSESMDLSKI
KEVYYESFQSVKQREIFRGTTLIGPHRDDLQFFVNSKNVQVFGSQGQQRTTALSLKLAEIELIYSEVKEYPILLLDDVLS
ELDDYRQSHLLNTIQGKVQTFVTTTSVDGIEHETLKDAKTIHVTNGTVDCEIDRA

Nucleotide


Download         Length: 1128 bp        

>NTDB_id=154685 ACN91_RS00415 WP_053563257.1 77753..78880(-) (recF) [Bacillus cereus strain NJ-W]
TTGTTTATTTCAGAAATACAATTAAACAACTATCGCAATTATGAAAAATTAGAGCTTTCCTTTGAAGATAAGGTAAATGT
AATTATCGGCGAAAATGCACAAGGGAAAACAAACTTGATGGAAGCTATTTATGTTTTAGCGATGGCGAAATCTCATAGAA
CCTCTAATGATCGCGAACTTATCCGCTGGGATGAAGAGTTTGGTCAAATAAAAGGGAAATTACAAAAAAGAAACAGTTCT
TTGTCTTTGGAATTAAATATTTCGAAAAAAGGTAAAAAGGCAAAATTAAATCAACTTGAACAACAAAAGTTAAGTCAATA
TATTGGCGTGATGAACGTTGTCATGTTTGCCCCAGAAGATTTAAATCTTGTAAAAGGAAGCCCTCAAGTAAGAAGACGCT
TTTTAGATATGGAATTAGGACAAATAGCTCCTGTATATTTGTATGAATTAAGTCAATATCAAAAGGTGCTCACGCAACGA
AATCACTTGTTGAAAAAAATGCAAGGGAATAGTAAGAATGAGGAAACGATGTTGGATGTATTTACCCTTCAACTAATTGA
GCATGGTGCAAAAATACTGCAAAAACGTTTTGAATTTTTGCATTTGCTACAGGAATGGGCAGCTCCAATTCATCGCGGTA
TAAGCCGTGGATTAGAAGAGTTAGAAATTGTCTATAAACCAAGTGTAGATGTATCAGAATCAATGGATTTGTCGAAAATA
AAAGAAGTATACTATGAAAGTTTTCAATCTGTGAAACAACGTGAAATTTTCCGTGGTACGACTTTAATTGGTCCTCATCG
TGATGATTTACAATTCTTCGTTAATAGTAAAAATGTTCAAGTCTTTGGTTCGCAAGGACAACAACGAACGACCGCACTAT
CCCTAAAATTAGCTGAAATTGAATTAATTTATTCAGAGGTTAAAGAATATCCAATCCTTTTACTGGATGATGTTTTATCA
GAATTAGACGATTATCGTCAATCACATCTGTTAAATACAATTCAAGGAAAGGTGCAAACATTTGTTACAACGACGAGTGT
CGACGGAATTGAACACGAAACATTAAAAGATGCGAAAACAATTCATGTAACGAACGGCACGGTAGATTGTGAAATAGATA
GGGCATAA

Domains

Predicted by InterproScan.

RecF/RecN/SMC N terminal domain (SMC_N)

(2-348)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recF Bacillus subtilis subsp. subtilis str. 168

66.304

98.133

0.651

Multiple sequence alignment