Detailed information    

insolico Bioinformatically predicted

Overview

Name   kre   Type   Regulator
Locus tag   AMR71_RS13035 Genome accession   NZ_CP012482
Coordinates   2555877..2556338 (+) Length   153 a.a.
NCBI ID   WP_008356877.1    Uniprot ID   -
Organism   Bacillus altitudinis strain NJ-V2     
Function   regulation of regulators (predicted from homology)   
Competence regulation

Genomic Context

Location: 2550877..2561338
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AMR71_RS13015 (AMR71_13035) - 2551223..2551720 (+) 498 WP_008348009.1 L,D-transpeptidase family protein -
  AMR71_RS13020 (AMR71_13040) - 2551794..2553071 (+) 1278 WP_017367146.1 MFS transporter -
  AMR71_RS13025 (AMR71_13045) - 2553332..2554684 (-) 1353 WP_057079612.1 IS1182 family transposase -
  AMR71_RS20015 - 2554840..2555016 (-) 177 WP_164071261.1 hypothetical protein -
  AMR71_RS13030 (AMR71_13050) - 2555184..2555399 (+) 216 WP_008348016.1 hypothetical protein -
  AMR71_RS13035 (AMR71_13055) kre 2555877..2556338 (+) 462 WP_008356877.1 YkyB family protein Regulator
  AMR71_RS13040 (AMR71_13060) - 2556428..2557336 (-) 909 WP_008348035.1 chemotaxis protein -
  AMR71_RS13045 (AMR71_13065) - 2557410..2558720 (-) 1311 WP_035392222.1 MFS transporter -
  AMR71_RS13050 (AMR71_13070) - 2558845..2559384 (-) 540 WP_057079613.1 RDD family protein -
  AMR71_RS20020 - 2559682..2559837 (+) 156 WP_155720694.1 hypothetical protein -
  AMR71_RS13055 (AMR71_13075) - 2559902..2560786 (-) 885 WP_035392224.1 cation diffusion facilitator family transporter -

Sequence

Protein


Download         Length: 153 a.a.        Molecular weight: 17711.30 Da        Isoelectric Point: 10.2452

>NTDB_id=154661 AMR71_RS13035 WP_008356877.1 2555877..2556338(+) (kre) [Bacillus altitudinis strain NJ-V2]
MDDYAHTKDIEPTAENIAKAIYTVNRHAKTAPNPKFLYLLKKRALQKLLQEGKGRKVGLHFSNNPKYSQQQSDVLIEIGD
YYFHLPPTKEDFEFLPHLGNLNQSYRNPKANMSLNRAKQILQTYVGLKEKPAATKQKSHYTKPVFKRLGESYF

Nucleotide


Download         Length: 462 bp        

>NTDB_id=154661 AMR71_RS13035 WP_008356877.1 2555877..2556338(+) (kre) [Bacillus altitudinis strain NJ-V2]
ATGGACGATTATGCTCATACTAAAGACATAGAACCTACAGCAGAAAACATCGCAAAAGCCATTTATACTGTTAACCGCCA
TGCTAAAACCGCACCAAATCCCAAGTTTCTTTATCTTTTGAAAAAACGTGCGCTGCAAAAACTATTGCAAGAAGGTAAAG
GAAGAAAAGTGGGCCTACATTTCTCTAACAATCCCAAATATAGTCAACAACAGTCCGACGTGCTGATTGAAATTGGAGAT
TATTATTTTCATCTGCCACCAACTAAAGAAGACTTCGAATTTTTGCCACACTTAGGAAATTTAAATCAATCATATCGCAA
TCCAAAAGCGAATATGTCATTAAATCGAGCGAAACAAATACTTCAAACGTATGTCGGTTTAAAAGAAAAACCTGCCGCCA
CAAAACAAAAATCACATTATACAAAACCCGTCTTCAAACGGCTCGGGGAAAGTTATTTTTAA

Domains

Predicted by InterproScan.

YkyB-like protein (YkyB)

(14-127)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  kre Bacillus subtilis subsp. subtilis str. 168

75.974

100

0.765

Multiple sequence alignment