Detailed information    

insolico Bioinformatically predicted

Overview

Name   rok   Type   Regulator
Locus tag   AMR71_RS12915 Genome accession   NZ_CP012482
Coordinates   2535556..2536137 (-) Length   193 a.a.
NCBI ID   WP_017367156.1    Uniprot ID   A0AB39J8T9
Organism   Bacillus altitudinis strain NJ-V2     
Function   repression of comK (predicted from homology)   
Competence regulation

Genomic Context

Location: 2530556..2541137
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AMR71_RS12885 (AMR71_12905) - 2530589..2531080 (-) 492 WP_008345161.1 molybdenum cofactor biosynthesis protein MoaE -
  AMR71_RS12890 (AMR71_12910) mobB 2531073..2531600 (-) 528 WP_019743802.1 molybdopterin-guanine dinucleotide biosynthesis protein B -
  AMR71_RS12895 (AMR71_12915) glp 2531582..2532856 (-) 1275 WP_029575455.1 gephyrin-like molybdotransferase Glp -
  AMR71_RS12900 (AMR71_12920) - 2532866..2533882 (-) 1017 WP_057079605.1 MoeB/ThiF family adenylyltransferase -
  AMR71_RS12905 (AMR71_12925) - 2533912..2534493 (-) 582 WP_065864794.1 molybdenum cofactor guanylyltransferase -
  AMR71_RS12910 (AMR71_12930) - 2534577..2535494 (+) 918 WP_057079607.1 hypothetical protein -
  AMR71_RS12915 (AMR71_12935) rok 2535556..2536137 (-) 582 WP_017367156.1 hypothetical protein Regulator
  AMR71_RS12920 (AMR71_12940) - 2536619..2537077 (-) 459 WP_008345174.1 TlpA disulfide reductase family protein -
  AMR71_RS12925 (AMR71_12945) ahpA 2537354..2537896 (-) 543 WP_007498654.1 biofilm-specific peroxidase AhpA -
  AMR71_RS12930 (AMR71_12950) - 2538168..2538977 (+) 810 WP_057079608.1 mechanosensitive ion channel family protein -
  AMR71_RS12935 (AMR71_12955) - 2539001..2539243 (-) 243 WP_003211408.1 YkuS family protein -
  AMR71_RS12940 (AMR71_12960) - 2539294..2540472 (-) 1179 WP_048001606.1 N-acetyldiaminopimelate deacetylase -

Sequence

Protein


Download         Length: 193 a.a.        Molecular weight: 21875.86 Da        Isoelectric Point: 9.7309

>NTDB_id=154660 AMR71_RS12915 WP_017367156.1 2535556..2536137(-) (rok) [Bacillus altitudinis strain NJ-V2]
MFNEREALRLRLEQLNEAEVKVIREYQIERDAIYAKLRELDRQGTGLVTDTKKEVRTERKTDSLPVLAELAAQEMRSYQQ
PAQTQSNVTSSLGTGQLNGAPVGIPEGSTRRRRGTARPGSKAAKLREAAIKTLKRHNAAIKSSELQKEIEKESGLEIPNM
TTFMQSLIKMYPEVKKPYRGQYILEGDIQTEDE

Nucleotide


Download         Length: 582 bp        

>NTDB_id=154660 AMR71_RS12915 WP_017367156.1 2535556..2536137(-) (rok) [Bacillus altitudinis strain NJ-V2]
TTGTTTAATGAGAGGGAAGCGTTACGTTTACGATTGGAACAATTAAACGAAGCAGAAGTAAAGGTCATCCGTGAATATCA
AATTGAACGAGATGCGATTTACGCAAAACTAAGAGAATTAGACCGTCAAGGTACAGGTCTCGTCACAGATACAAAAAAAG
AAGTGCGTACAGAGAGAAAAACGGATTCATTGCCTGTATTAGCTGAGCTGGCTGCACAAGAAATGAGAAGCTACCAGCAG
CCTGCGCAAACGCAGTCAAACGTTACATCATCTTTAGGAACAGGTCAGCTAAATGGTGCACCTGTAGGTATTCCTGAAGG
ATCTACAAGACGCAGAAGAGGCACAGCTAGACCTGGATCAAAGGCAGCTAAGCTTCGTGAAGCTGCAATCAAAACATTAA
AGCGTCATAATGCGGCGATTAAAAGCTCTGAACTTCAAAAAGAGATTGAAAAAGAGAGCGGTCTTGAAATTCCAAATATG
ACAACGTTTATGCAAAGCTTAATTAAAATGTACCCAGAAGTGAAGAAACCTTATCGCGGACAGTATATTTTAGAAGGCGA
CATTCAAACAGAAGACGAATAA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rok Bacillus subtilis subsp. subtilis str. 168

80

98.446

0.788

Multiple sequence alignment