Detailed information    

insolico Bioinformatically predicted

Overview

Name   abrB   Type   Regulator
Locus tag   AMR71_RS12805 Genome accession   NZ_CP012482
Coordinates   2514281..2514559 (-) Length   92 a.a.
NCBI ID   WP_008345129.1    Uniprot ID   A0AAD0MKH3
Organism   Bacillus altitudinis strain NJ-V2     
Function   repression of comK; repression of rok (predicted from homology)   
Competence regulation

Genomic Context

Location: 2509281..2519559
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AMR71_RS12790 (AMR71_12810) - 2511271..2511939 (-) 669 WP_008345123.1 potassium channel family protein -
  AMR71_RS12795 (AMR71_12815) - 2511977..2512819 (-) 843 WP_057079598.1 gamma-glutamylcyclotransferase -
  AMR71_RS12800 (AMR71_12820) - 2512847..2514136 (-) 1290 WP_057079599.1 ATP-binding protein -
  AMR71_RS12805 (AMR71_12825) abrB 2514281..2514559 (-) 279 WP_008345129.1 AbrB/MazE/SpoVT family DNA-binding domain-containing protein Regulator
  AMR71_RS12810 (AMR71_12830) mreBH 2514836..2515843 (+) 1008 WP_017359401.1 rod-share determining protein MreBH -
  AMR71_RS20010 - 2515918..2516049 (+) 132 WP_003210922.1 protein YkpC -
  AMR71_RS12815 (AMR71_12835) - 2516156..2517388 (+) 1233 WP_057079600.1 aminopeptidase -
  AMR71_RS12820 (AMR71_12840) - 2517521..2518873 (+) 1353 WP_025206678.1 IS1182 family transposase -

Sequence

Protein


Download         Length: 92 a.a.        Molecular weight: 10320.00 Da        Isoelectric Point: 4.5447

>NTDB_id=154659 AMR71_RS12805 WP_008345129.1 2514281..2514559(-) (abrB) [Bacillus altitudinis strain NJ-V2]
MKSIGVVRKVDELGRIVMPIELRRALDIAIKDSMEFFIDGEKIVLKKYQPEGVCLMTGEITSENHEYGNGQITLSAEGAE
LLLKELQEALQQ

Nucleotide


Download         Length: 279 bp        

>NTDB_id=154659 AMR71_RS12805 WP_008345129.1 2514281..2514559(-) (abrB) [Bacillus altitudinis strain NJ-V2]
TTGAAATCTATCGGAGTTGTAAGAAAAGTAGATGAACTAGGGCGTATTGTGATGCCAATCGAATTGAGAAGAGCACTTGA
TATCGCTATTAAAGACAGTATGGAATTTTTTATAGATGGAGAGAAAATCGTCTTGAAAAAATATCAGCCAGAGGGCGTCT
GCCTGATGACTGGTGAGATTACTTCTGAGAACCACGAGTATGGAAATGGTCAAATTACATTAAGCGCTGAAGGCGCAGAA
CTGCTGCTAAAAGAGCTTCAAGAAGCCCTTCAGCAGTAA

Domains

Predicted by InterproScan.

AbrB C-terminal domain (AbrB_C)

(53-88)

Antidote-toxin recognition MazE, bacterial antitoxin (MazE_antitoxin)

(8-51)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  abrB Bacillus subtilis subsp. subtilis str. 168

55.435

100

0.554

Multiple sequence alignment