Detailed information
Bioinformatically predicted
Overview
| Name | recU | Type | Machinery gene |
| Locus tag | AMR71_RS09375 | Genome accession | NZ_CP012482 |
| Coordinates | 1826201..1826836 (-) | Length | 211 a.a. |
| NCBI ID | WP_057079360.1 | Uniprot ID | - |
| Organism | Bacillus altitudinis strain NJ-V2 | ||
| Function | plasmid transformation; homologous recombination (predicted from homology) Homologous recombination |
||
Related MGE
Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.
Gene-MGE association summary
| MGE type | MGE coordinates | Gene coordinates | Relative position | Distance (bp) |
|---|---|---|---|---|
| Prophage | 1821568..1875374 | 1826201..1826836 | within | 0 |
Gene organization within MGE regions
Location: 1821568..1875374
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| AMR71_RS09355 (AMR71_09355) | - | 1821568..1822272 (+) | 705 | WP_046343833.1 | DnaD domain-containing protein | - |
| AMR71_RS09360 (AMR71_09360) | nth | 1822290..1822952 (+) | 663 | WP_057079358.1 | endonuclease III | - |
| AMR71_RS09365 (AMR71_09365) | - | 1822949..1823458 (+) | 510 | WP_025207533.1 | YpoC family protein | - |
| AMR71_RS09370 (AMR71_09370) | - | 1823494..1826181 (-) | 2688 | WP_057079359.1 | PBP1A family penicillin-binding protein | - |
| AMR71_RS09375 (AMR71_09375) | recU | 1826201..1826836 (-) | 636 | WP_057079360.1 | Holliday junction resolvase RecU | Machinery gene |
| AMR71_RS09380 (AMR71_09380) | - | 1826883..1827839 (+) | 957 | WP_017359732.1 | DUF2515 domain-containing protein | - |
| AMR71_RS09385 (AMR71_09385) | sspM | 1827863..1827967 (-) | 105 | WP_017359731.1 | acid-soluble spore protein SspM | - |
| AMR71_RS09390 (AMR71_09390) | - | 1828161..1828397 (+) | 237 | WP_008344612.1 | DUF5446 family protein | - |
| AMR71_RS09395 (AMR71_09395) | - | 1828447..1828827 (+) | 381 | WP_225310452.1 | YppE family protein | - |
| AMR71_RS09400 (AMR71_09400) | - | 1828936..1829388 (+) | 453 | WP_017359729.1 | YppG family protein | - |
| AMR71_RS09405 (AMR71_09405) | - | 1829410..1829829 (-) | 420 | WP_007500867.1 | Hsp20/alpha crystallin family protein | - |
| AMR71_RS09410 (AMR71_09410) | - | 1829998..1830504 (+) | 507 | WP_008344623.1 | PTS sugar transporter subunit IIA | - |
| AMR71_RS09415 (AMR71_09415) | - | 1830554..1831672 (-) | 1119 | WP_234780998.1 | NADH-dependent flavin oxidoreductase | - |
| AMR71_RS09420 (AMR71_09420) | - | 1831833..1833641 (+) | 1809 | Protein_1876 | DEAD/DEAH box helicase | - |
| AMR71_RS09425 (AMR71_09425) | - | 1833671..1835470 (-) | 1800 | WP_057079362.1 | recombinase family protein | - |
| AMR71_RS09430 | - | 1835514..1835915 (-) | 402 | WP_057079363.1 | helix-turn-helix domain-containing protein | - |
| AMR71_RS09435 (AMR71_09435) | - | 1836080..1836289 (+) | 210 | WP_057095059.1 | helix-turn-helix transcriptional regulator | - |
| AMR71_RS09440 (AMR71_09440) | - | 1836339..1836542 (+) | 204 | WP_057079365.1 | hypothetical protein | - |
| AMR71_RS09445 (AMR71_09445) | - | 1836798..1837076 (+) | 279 | WP_057079366.1 | YqaH family protein | - |
| AMR71_RS09450 (AMR71_09450) | - | 1837140..1837580 (+) | 441 | WP_057079367.1 | hypothetical protein | - |
| AMR71_RS09455 (AMR71_09455) | - | 1837577..1838749 (+) | 1173 | WP_057079368.1 | DUF2800 domain-containing protein | - |
| AMR71_RS09460 (AMR71_09460) | - | 1838871..1839617 (+) | 747 | WP_057079369.1 | DUF2815 family protein | - |
| AMR71_RS09465 (AMR71_09465) | - | 1839617..1841596 (+) | 1980 | WP_205627798.1 | DNA polymerase | - |
| AMR71_RS09470 (AMR71_09470) | - | 1841754..1842143 (+) | 390 | WP_057079371.1 | hypothetical protein | - |
| AMR71_RS09475 (AMR71_09475) | - | 1842148..1842567 (+) | 420 | WP_234780999.1 | hypothetical protein | - |
| AMR71_RS09480 (AMR71_09480) | - | 1842564..1842785 (+) | 222 | WP_057079373.1 | hypothetical protein | - |
| AMR71_RS09485 (AMR71_09485) | - | 1842805..1845225 (+) | 2421 | WP_057079374.1 | virulence-associated E family protein | - |
| AMR71_RS09490 (AMR71_09490) | - | 1845518..1845814 (+) | 297 | WP_057079375.1 | VRR-NUC domain-containing protein | - |
| AMR71_RS09495 (AMR71_09495) | - | 1845811..1847193 (+) | 1383 | WP_057079376.1 | DEAD/DEAH box helicase | - |
| AMR71_RS09500 (AMR71_09500) | - | 1847190..1847702 (+) | 513 | WP_057079377.1 | hypothetical protein | - |
| AMR71_RS09505 (AMR71_09505) | - | 1847847..1848107 (+) | 261 | WP_057079378.1 | hypothetical protein | - |
| AMR71_RS19485 (AMR71_09510) | - | 1848174..1848530 (+) | 357 | WP_057079379.1 | HNH endonuclease | - |
| AMR71_RS09510 (AMR71_09515) | - | 1848523..1848843 (+) | 321 | WP_081038962.1 | transglycosylase | - |
| AMR71_RS09515 (AMR71_09520) | - | 1848930..1849433 (+) | 504 | WP_057079380.1 | phage terminase small subunit P27 family | - |
| AMR71_RS09520 (AMR71_09525) | - | 1849433..1851145 (+) | 1713 | WP_057079381.1 | terminase large subunit | - |
| AMR71_RS20155 (AMR71_09530) | - | 1851159..1851341 (+) | 183 | WP_057079382.1 | hypothetical protein | - |
| AMR71_RS09530 (AMR71_09535) | - | 1851347..1852588 (+) | 1242 | WP_057079383.1 | phage portal protein | - |
| AMR71_RS09535 (AMR71_09540) | - | 1852581..1853213 (+) | 633 | WP_057079384.1 | HK97 family phage prohead protease | - |
| AMR71_RS09540 (AMR71_09545) | - | 1853249..1854430 (+) | 1182 | WP_057079385.1 | phage major capsid protein | - |
| AMR71_RS09545 (AMR71_09550) | - | 1854441..1854740 (+) | 300 | WP_057079386.1 | hypothetical protein | - |
| AMR71_RS09550 (AMR71_09555) | - | 1854765..1855166 (+) | 402 | WP_017367773.1 | collagen-like triple helix repeat-containing protein | - |
| AMR71_RS09555 (AMR71_09560) | - | 1855181..1855522 (+) | 342 | WP_057079387.1 | head-tail connector protein | - |
| AMR71_RS09560 (AMR71_09565) | - | 1855458..1855823 (+) | 366 | WP_057079388.1 | phage head closure protein | - |
| AMR71_RS09565 (AMR71_09570) | - | 1855816..1856199 (+) | 384 | WP_057079389.1 | HK97-gp10 family putative phage morphogenesis protein | - |
| AMR71_RS09570 (AMR71_09575) | gp17 | 1856196..1856564 (+) | 369 | WP_057079390.1 | tail completion protein gp17 | - |
| AMR71_RS09575 (AMR71_09580) | - | 1856576..1857202 (+) | 627 | WP_057079391.1 | major tail protein | - |
| AMR71_RS09580 (AMR71_09585) | gpG | 1857241..1857576 (+) | 336 | WP_057079392.1 | phage tail assembly chaperone G | - |
| AMR71_RS09585 (AMR71_09590) | - | 1857579..1857773 (+) | 195 | WP_017367766.1 | hypothetical protein | - |
| AMR71_RS09590 (AMR71_09595) | - | 1857789..1861805 (+) | 4017 | WP_057079393.1 | phage tail tape measure protein | - |
| AMR71_RS09595 (AMR71_09600) | - | 1861805..1862638 (+) | 834 | WP_057079394.1 | phage tail domain-containing protein | - |
| AMR71_RS09600 (AMR71_09605) | - | 1862651..1864381 (+) | 1731 | WP_057079395.1 | phage tail protein | - |
| AMR71_RS09605 (AMR71_09610) | - | 1864411..1866294 (+) | 1884 | WP_234781000.1 | right-handed parallel beta-helix repeat-containing protein | - |
| AMR71_RS09610 (AMR71_09615) | - | 1866308..1867666 (+) | 1359 | WP_057079397.1 | phage baseplate upper protein | - |
| AMR71_RS09615 (AMR71_09620) | - | 1867684..1867983 (+) | 300 | WP_057079398.1 | hypothetical protein | - |
| AMR71_RS09620 (AMR71_09625) | - | 1867980..1868159 (+) | 180 | WP_057079399.1 | XkdX family protein | - |
| AMR71_RS09625 (AMR71_09630) | - | 1868202..1868621 (+) | 420 | WP_057079400.1 | phage holin family protein | - |
| AMR71_RS09630 (AMR71_09635) | - | 1868667..1869476 (+) | 810 | WP_057079401.1 | N-acetylmuramoyl-L-alanine amidase | - |
| AMR71_RS09640 | - | 1869749..1870240 (-) | 492 | WP_057079402.1 | hypothetical protein | - |
| AMR71_RS09645 (AMR71_09650) | - | 1870383..1870574 (-) | 192 | WP_057079403.1 | helix-turn-helix domain-containing protein | - |
| AMR71_RS09650 (AMR71_09655) | - | 1870828..1871907 (+) | 1080 | WP_057079404.1 | RapH N-terminal domain-containing protein | - |
| AMR71_RS09655 (AMR71_09660) | - | 1871928..1872131 (+) | 204 | WP_057079405.1 | hypothetical protein | - |
| AMR71_RS09660 (AMR71_09665) | - | 1872262..1872453 (+) | 192 | WP_123768291.1 | hypothetical protein | - |
| AMR71_RS09665 (AMR71_09670) | - | 1872502..1872960 (+) | 459 | Protein_1925 | Zn-binding domain-containing protein | - |
| AMR71_RS09670 (AMR71_09675) | - | 1872984..1874231 (+) | 1248 | WP_057079408.1 | ribonuclease H-like domain-containing protein | - |
| AMR71_RS19490 | cotD | 1874546..1874782 (+) | 237 | WP_072368252.1 | spore coat protein CotD | - |
| AMR71_RS09675 (AMR71_09680) | - | 1874832..1875374 (+) | 543 | WP_202394241.1 | DUF1273 domain-containing protein | - |
Sequence
Protein
Download Length: 211 a.a. Molecular weight: 24344.69 Da Isoelectric Point: 9.6582
>NTDB_id=154653 AMR71_RS09375 WP_057079360.1 1826201..1826836(-) (recU) [Bacillus altitudinis strain NJ-V2]
MIRYPNGKSYQPIQQIGTKKRISGESSYSNRGMMLEADLNETNQYYLVNGIAVIHKKPTPVQIVNVDYPKRSAAVIKEAY
FKQSSTTDYNGVYKGRYIDFEAKETKSTTSFPLKNFHDHQIEHMKQVEKQGGICFVIISAFGSVYYLSATDLFFFWERQQ
QNGRKSISKDELMEAGHLMTLGYSPRIDYIKVVETLHFSDDSKQHLRSKKV
MIRYPNGKSYQPIQQIGTKKRISGESSYSNRGMMLEADLNETNQYYLVNGIAVIHKKPTPVQIVNVDYPKRSAAVIKEAY
FKQSSTTDYNGVYKGRYIDFEAKETKSTTSFPLKNFHDHQIEHMKQVEKQGGICFVIISAFGSVYYLSATDLFFFWERQQ
QNGRKSISKDELMEAGHLMTLGYSPRIDYIKVVETLHFSDDSKQHLRSKKV
Nucleotide
Download Length: 636 bp
>NTDB_id=154653 AMR71_RS09375 WP_057079360.1 1826201..1826836(-) (recU) [Bacillus altitudinis strain NJ-V2]
ATGATTCGGTATCCTAACGGAAAATCGTATCAGCCCATTCAACAAATTGGGACAAAAAAAAGAATCAGCGGCGAATCATC
TTATAGTAACCGCGGGATGATGCTTGAAGCTGACTTAAATGAAACGAACCAGTACTATTTGGTCAACGGGATCGCAGTCA
TTCATAAAAAGCCTACCCCTGTTCAAATTGTCAATGTGGATTATCCAAAAAGAAGCGCTGCTGTCATTAAAGAAGCCTAT
TTTAAACAATCCTCCACAACAGACTACAACGGGGTATACAAAGGGCGTTATATCGATTTTGAAGCAAAGGAAACCAAAAG
CACCACCTCGTTTCCACTCAAAAATTTCCACGACCATCAAATTGAGCATATGAAACAGGTTGAAAAGCAAGGCGGTATTT
GTTTTGTTATTATATCCGCATTTGGTTCCGTTTATTATTTGTCCGCTACTGACCTCTTCTTCTTTTGGGAGCGGCAGCAG
CAAAACGGCCGAAAATCCATTAGCAAAGATGAATTAATGGAAGCAGGTCACCTCATGACACTTGGATATTCGCCAAGAAT
TGATTATATTAAAGTAGTGGAGACACTTCATTTTTCGGATGACAGCAAGCAACATTTACGTTCGAAAAAGGTTTAA
ATGATTCGGTATCCTAACGGAAAATCGTATCAGCCCATTCAACAAATTGGGACAAAAAAAAGAATCAGCGGCGAATCATC
TTATAGTAACCGCGGGATGATGCTTGAAGCTGACTTAAATGAAACGAACCAGTACTATTTGGTCAACGGGATCGCAGTCA
TTCATAAAAAGCCTACCCCTGTTCAAATTGTCAATGTGGATTATCCAAAAAGAAGCGCTGCTGTCATTAAAGAAGCCTAT
TTTAAACAATCCTCCACAACAGACTACAACGGGGTATACAAAGGGCGTTATATCGATTTTGAAGCAAAGGAAACCAAAAG
CACCACCTCGTTTCCACTCAAAAATTTCCACGACCATCAAATTGAGCATATGAAACAGGTTGAAAAGCAAGGCGGTATTT
GTTTTGTTATTATATCCGCATTTGGTTCCGTTTATTATTTGTCCGCTACTGACCTCTTCTTCTTTTGGGAGCGGCAGCAG
CAAAACGGCCGAAAATCCATTAGCAAAGATGAATTAATGGAAGCAGGTCACCTCATGACACTTGGATATTCGCCAAGAAT
TGATTATATTAAAGTAGTGGAGACACTTCATTTTTCGGATGACAGCAAGCAACATTTACGTTCGAAAAAGGTTTAA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| recU | Bacillus subtilis subsp. subtilis str. 168 |
72.277 |
95.735 |
0.692 |