Detailed information    

insolico Bioinformatically predicted

Overview

Name   recO   Type   Machinery gene
Locus tag   AMR71_RS07925 Genome accession   NZ_CP012482
Coordinates   1562792..1563562 (+) Length   256 a.a.
NCBI ID   WP_007501304.1    Uniprot ID   -
Organism   Bacillus altitudinis strain NJ-V2     
Function   ssDNA annealing; plasmid transformation (predicted from homology)   
DNA processing Homologous recombination

Genomic Context

Location: 1557792..1568562
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AMR71_RS07900 (AMR71_07900) - 1558098..1560212 (+) 2115 WP_412459376.1 HD family phosphohydrolase -
  AMR71_RS07905 (AMR71_07905) ybeY 1560213..1560692 (+) 480 WP_007501310.1 rRNA maturation RNase YbeY -
  AMR71_RS07910 (AMR71_07910) - 1560670..1561056 (+) 387 WP_008342413.1 diacylglycerol kinase family protein -
  AMR71_RS07915 (AMR71_07915) - 1561169..1561567 (+) 399 WP_008342410.1 cytidine deaminase -
  AMR71_RS07920 (AMR71_07920) era 1561560..1562465 (+) 906 WP_007501305.1 GTPase Era -
  AMR71_RS19420 - 1562613..1562756 (+) 144 WP_008342408.1 YqzL family protein -
  AMR71_RS07925 (AMR71_07925) recO 1562792..1563562 (+) 771 WP_007501304.1 DNA repair protein RecO Machinery gene
  AMR71_RS07930 (AMR71_07930) glyQ 1563892..1564779 (+) 888 WP_003217487.1 glycine--tRNA ligase subunit alpha -
  AMR71_RS07935 (AMR71_07935) glyS 1564772..1566817 (+) 2046 WP_057079301.1 glycine--tRNA ligase subunit beta -
  AMR71_RS07940 (AMR71_07940) - 1566984..1567622 (+) 639 WP_024423017.1 helix-turn-helix transcriptional regulator -
  AMR71_RS07945 (AMR71_07945) - 1567648..1568469 (+) 822 WP_008342399.1 pyruvate, water dikinase regulatory protein -

Sequence

Protein


Download         Length: 256 a.a.        Molecular weight: 29345.04 Da        Isoelectric Point: 8.4348

>NTDB_id=154647 AMR71_RS07925 WP_007501304.1 1562792..1563562(+) (recO) [Bacillus altitudinis strain NJ-V2]
MLIKSEGIVLRTTDYGETNKIVTLLTREHGKIGVMARGAKKSNSRLSAISQPFLYGTFLIQSSTGLGTLQQGEMMESMRT
IREDLFLTAYAAYMTELLDKGTEEKKPNPYLFELLLQSLRHLNEGTDADIILFIVEVKMLSVMGLKPELDQCVHCGQKEG
QFHFSIRDNGFICRQCFSKDPYKLPLSPAAARLLRLFHYFDLSRLGQVDVKPQTKQEIRQVLDHYYEEYSGLYLKSKKFM
NQMESMKKLMDGENKS

Nucleotide


Download         Length: 771 bp        

>NTDB_id=154647 AMR71_RS07925 WP_007501304.1 1562792..1563562(+) (recO) [Bacillus altitudinis strain NJ-V2]
ATGCTCATTAAAAGTGAAGGAATCGTCCTTAGAACAACAGATTATGGCGAAACAAACAAAATTGTCACGCTGCTCACTAG
AGAACATGGGAAAATTGGTGTGATGGCAAGAGGCGCTAAGAAATCGAACAGCCGCCTGTCAGCCATAAGCCAGCCGTTTT
TATACGGAACCTTCCTGATCCAATCATCAACAGGACTTGGAACGCTCCAGCAAGGTGAAATGATGGAAAGCATGCGAACC
ATTCGGGAAGATTTATTTCTGACCGCATATGCCGCATATATGACAGAATTACTTGATAAAGGAACAGAAGAAAAGAAGCC
AAACCCTTACTTGTTTGAACTTCTTCTTCAATCTTTACGCCATCTCAATGAAGGCACAGATGCTGATATTATTTTATTTA
TCGTAGAGGTCAAAATGCTGTCAGTGATGGGGTTGAAGCCTGAACTGGACCAATGTGTACACTGCGGTCAAAAAGAAGGG
CAGTTCCATTTCTCAATTAGAGATAACGGATTCATCTGTAGGCAATGCTTTTCTAAAGATCCATATAAACTGCCCTTATC
CCCAGCAGCAGCAAGACTGCTCCGTTTGTTTCATTATTTTGATTTATCAAGGCTTGGTCAGGTTGACGTGAAACCACAAA
CGAAACAAGAAATTCGTCAAGTGCTCGATCATTATTATGAAGAGTATTCAGGTCTTTATTTAAAATCAAAAAAATTCATG
AATCAAATGGAATCCATGAAAAAGCTAATGGACGGTGAAAACAAAAGTTGA

Domains

Predicted by InterproScan.

Recombination protein O C terminal (RecO_C)

(82-237)

Recombination protein O N terminal (RecO_N)

(1-77)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recO Bacillus subtilis subsp. subtilis str. 168

75.781

100

0.758

Multiple sequence alignment