Detailed information    

insolico Bioinformatically predicted

Overview

Name   comA   Type   Regulator
Locus tag   AMR71_RS05010 Genome accession   NZ_CP012482
Coordinates   1004213..1004854 (+) Length   213 a.a.
NCBI ID   WP_007500477.1    Uniprot ID   -
Organism   Bacillus altitudinis strain NJ-V2     
Function   promoting transcription of comS (predicted from homology)   
Competence regulation

Genomic Context

Location: 999213..1009854
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AMR71_RS04985 (AMR71_04985) - 999590..999943 (-) 354 WP_017367963.1 hypothetical protein -
  AMR71_RS04990 (AMR71_04990) degQ 1000449..1000589 (+) 141 WP_003213123.1 degradation enzyme regulation protein DegQ Regulator
  AMR71_RS04995 (AMR71_04995) - 1000741..1001664 (+) 924 WP_008345863.1 polyprenyl synthetase family protein -
  AMR71_RS05000 (AMR71_05000) comX 1001642..1001812 (+) 171 WP_017358941.1 competence pheromone ComX -
  AMR71_RS05005 (AMR71_05005) comP 1001826..1004132 (+) 2307 WP_017367961.1 ATP-binding protein Regulator
  AMR71_RS05010 (AMR71_05010) comA 1004213..1004854 (+) 642 WP_007500477.1 response regulator transcription factor Regulator
  AMR71_RS05015 (AMR71_05015) - 1004877..1005266 (+) 390 WP_017358943.1 hotdog fold thioesterase -
  AMR71_RS05020 (AMR71_05020) mnhG 1005357..1005731 (-) 375 WP_003213369.1 monovalent cation/H(+) antiporter subunit G -
  AMR71_RS05025 (AMR71_05025) - 1005715..1005996 (-) 282 WP_008345849.1 Na(+)/H(+) antiporter subunit F1 -
  AMR71_RS05030 (AMR71_05030) - 1005996..1006475 (-) 480 WP_008345848.1 Na+/H+ antiporter subunit E -
  AMR71_RS05035 (AMR71_05035) - 1006482..1007960 (-) 1479 WP_046344384.1 Na+/H+ antiporter subunit D -
  AMR71_RS05040 (AMR71_05040) - 1007953..1008294 (-) 342 WP_003213576.1 Na(+)/H(+) antiporter subunit C -
  AMR71_RS05045 (AMR71_05045) - 1008294..1008725 (-) 432 WP_008345843.1 Na(+)/H(+) antiporter subunit B -

Sequence

Protein


Download         Length: 213 a.a.        Molecular weight: 24140.53 Da        Isoelectric Point: 4.5688

>NTDB_id=154638 AMR71_RS05010 WP_007500477.1 1004213..1004854(+) (comA) [Bacillus altitudinis strain NJ-V2]
MKKILVIDDHPAVMEGTKSILESDQQLSVDCLSPDAEGAFLKTHDFSIYDVILMDLNLGDINGMDIAKQILETNQQVKII
IYTGYEVDDYFEEAIRAGLHGAISKTETKDKIIEYIHRTLQGEVVIQLSYLKKLISQQQEKPEQAQQTDHELLTERECLI
LREVEKGYTNQEIADVLHLSKRSIEYSLTSIFNKLNVGSRTEAVLIAKSESVL

Nucleotide


Download         Length: 642 bp        

>NTDB_id=154638 AMR71_RS05010 WP_007500477.1 1004213..1004854(+) (comA) [Bacillus altitudinis strain NJ-V2]
ATGAAGAAGATATTGGTCATTGATGATCATCCGGCTGTCATGGAAGGGACAAAAAGCATATTAGAATCAGATCAGCAGCT
ATCAGTCGATTGTTTAAGTCCTGATGCAGAAGGCGCCTTTTTAAAGACGCATGACTTTTCCATCTATGATGTGATCTTGA
TGGATTTAAATCTCGGGGATATCAATGGAATGGACATTGCCAAACAAATTCTAGAAACGAATCAACAAGTGAAAATTATC
ATTTATACAGGATATGAAGTAGACGATTATTTCGAAGAGGCCATTCGAGCTGGATTGCATGGTGCAATAAGTAAAACAGA
GACAAAAGACAAAATCATTGAATACATACACCGCACATTGCAAGGAGAAGTTGTCATTCAGCTATCCTATTTAAAGAAAT
TAATTTCACAGCAGCAAGAGAAGCCAGAACAGGCGCAGCAGACGGATCATGAGCTGTTAACAGAGCGTGAATGTTTAATC
TTAAGAGAAGTGGAAAAAGGGTACACAAACCAAGAGATCGCCGATGTGCTTCATTTGAGCAAACGCTCGATTGAATACAG
TTTGACATCCATCTTTAATAAGCTGAATGTTGGATCTCGAACGGAAGCGGTGTTAATTGCAAAATCGGAAAGTGTCCTGT
AA

Domains

Predicted by InterproScan.

Bacterial regulatory proteins, luxR family (GerE)

(152-207)

Response regulator receiver domain (Response_reg)

(4-116)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comA Bacillus subtilis subsp. subtilis str. 168

71.495

100

0.718

Multiple sequence alignment