Detailed information    

insolico Bioinformatically predicted

Overview

Name   vraR   Type   Regulator
Locus tag   A7B19_RS04800 Genome accession   NZ_CP015726
Coordinates   1252234..1252896 (-) Length   220 a.a.
NCBI ID   WP_234364902.1    Uniprot ID   -
Organism   Streptomyces sp. RTd22     
Function   repress expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 1247234..1257896
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  A7B19_RS04780 - 1247244..1248530 (-) 1287 WP_063727242.1 alpha-L-fucosidase -
  A7B19_RS04785 - 1248561..1249415 (-) 855 WP_063727240.1 carbohydrate ABC transporter permease -
  A7B19_RS04790 - 1249408..1250469 (-) 1062 WP_199844143.1 carbohydrate ABC transporter permease -
  A7B19_RS04795 - 1250571..1251791 (-) 1221 WP_234364903.1 ABC transporter substrate-binding protein -
  A7B19_RS04800 vraR 1252234..1252896 (-) 663 WP_234364902.1 response regulator Regulator
  A7B19_RS04805 - 1252934..1254157 (-) 1224 WP_063727234.1 sensor histidine kinase -
  A7B19_RS04810 - 1254358..1255134 (+) 777 WP_063727232.1 class I SAM-dependent methyltransferase -
  A7B19_RS04815 - 1255188..1255556 (+) 369 WP_063727230.1 CATRA system-associated protein -
  A7B19_RS04820 - 1255540..1257111 (+) 1572 WP_063727228.1 CATRA conflict system CASPASE/TPR repeat-associated protein -

Sequence

Protein


Download         Length: 220 a.a.        Molecular weight: 23172.66 Da        Isoelectric Point: 5.4075

>NTDB_id=154587 A7B19_RS04800 WP_234364902.1 1252234..1252896(-) (vraR) [Streptomyces sp. RTd22]
MTATDATPPIRLLLCDDHAVVRAGLLALLSSTAGIEVVGEAGSGEEALAMAARVRPDVVLMDLQLGDGMDGVEATRRLAS
GTGPAPEEPAPRVLVLTMFDTDADIARAIEAGATGYLLKAERPEELFAAIRNAAAGRTALSAPVADRLMAQMRTPRPTLS
ERERDILQQLARGLGNREIARALFISEATVKTHLGRIYGKLGVDTRAGAVAVATERRLLG

Nucleotide


Download         Length: 663 bp        

>NTDB_id=154587 A7B19_RS04800 WP_234364902.1 1252234..1252896(-) (vraR) [Streptomyces sp. RTd22]
ATGACCGCGACCGACGCCACCCCGCCCATCCGGCTGCTGCTGTGTGACGACCACGCCGTGGTGCGCGCCGGGCTGCTCGC
GCTGCTGTCCAGCACCGCGGGCATCGAGGTGGTCGGCGAGGCGGGCAGCGGCGAGGAGGCGCTCGCCATGGCCGCGCGCG
TACGGCCCGATGTGGTGCTCATGGATCTCCAGCTCGGGGACGGCATGGACGGCGTGGAAGCCACCCGCCGCCTGGCCTCC
GGCACCGGGCCCGCGCCGGAGGAACCGGCACCGCGGGTGCTGGTGCTCACCATGTTCGACACCGACGCGGACATCGCCCG
GGCCATCGAGGCGGGCGCCACCGGCTATCTGCTCAAGGCCGAGCGGCCGGAGGAGCTGTTCGCGGCGATACGGAACGCGG
CGGCCGGGCGCACCGCGCTGTCGGCGCCGGTCGCCGACCGGCTGATGGCCCAGATGCGCACGCCCCGCCCCACCCTCTCC
GAGCGCGAGCGGGACATCCTCCAGCAGCTCGCCCGCGGGCTGGGAAACCGGGAGATCGCCCGCGCCCTGTTCATCAGCGA
GGCCACGGTGAAGACCCACCTGGGGCGGATCTACGGCAAGCTGGGCGTGGACACCCGGGCGGGCGCGGTCGCCGTCGCCA
CCGAGCGGCGGCTGCTGGGCTGA

Domains

Predicted by InterProScan.

Bacterial regulatory proteins, luxR family (GerE)

(158-213)

Response regulator receiver domain (Response_reg)

(13-131)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  vraR Staphylococcus aureus N315

39.437

96.818

0.382

Multiple sequence alignment