Detailed information
Bioinformatically predicted
Overview
| Name | comYH | Type | Machinery gene |
| Locus tag | AMM49_RS01185 | Genome accession | NZ_CP012480 |
| Coordinates | 198384..199358 (+) | Length | 324 a.a. |
| NCBI ID | WP_001008572.1 | Uniprot ID | - |
| Organism | Streptococcus agalactiae strain NGBS128 | ||
| Function | dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 193384..204358
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| AMM49_RS01160 (AMM49_01155) | - | 195170..195535 (+) | 366 | WP_000285373.1 | DUF1033 family protein | - |
| AMM49_RS10915 (AMM49_01160) | comGA | 195707..196678 (+) | 972 | Protein_164 | competence type IV pilus ATPase ComGA | - |
| AMM49_RS01170 (AMM49_01165) | comYB | 196572..197615 (+) | 1044 | WP_223297804.1 | competence type IV pilus assembly protein ComGB | Machinery gene |
| AMM49_RS01175 (AMM49_01170) | comGF | 197640..198068 (+) | 429 | WP_223842274.1 | competence type IV pilus minor pilin ComGF | - |
| AMM49_RS01180 (AMM49_01175) | comGG | 198046..198269 (+) | 224 | Protein_167 | competence type IV pilus minor pilin ComGG | - |
| AMM49_RS01185 (AMM49_01180) | comYH | 198384..199358 (+) | 975 | WP_001008572.1 | class I SAM-dependent methyltransferase | Machinery gene |
| AMM49_RS01190 (AMM49_01185) | - | 199390..200583 (+) | 1194 | WP_000047534.1 | acetate kinase | - |
| AMM49_RS01195 (AMM49_01190) | - | 200734..200940 (+) | 207 | WP_000798241.1 | helix-turn-helix transcriptional regulator | - |
| AMM49_RS11200 | - | 200999..201136 (+) | 138 | WP_001869149.1 | hypothetical protein | - |
| AMM49_RS01200 (AMM49_01195) | - | 201177..201632 (+) | 456 | WP_000905672.1 | hypothetical protein | - |
| AMM49_RS01205 (AMM49_01200) | - | 201701..202366 (+) | 666 | WP_000008107.1 | CPBP family intramembrane glutamic endopeptidase | - |
| AMM49_RS01210 (AMM49_01205) | proC | 202387..203157 (-) | 771 | WP_001869147.1 | pyrroline-5-carboxylate reductase | - |
| AMM49_RS01215 (AMM49_01210) | pepA | 203227..204294 (-) | 1068 | WP_001281321.1 | glutamyl aminopeptidase | - |
Sequence
Protein
Download Length: 324 a.a. Molecular weight: 37115.02 Da Isoelectric Point: 4.4041
>NTDB_id=154581 AMM49_RS01185 WP_001008572.1 198384..199358(+) (comYH) [Streptococcus agalactiae strain NGBS128]
MNFEKIETAYELILENIQTIENQLKTHIYDALIEQNSYYLGSSCDLDIVVVNNQKLRQLDLSQEEWRRTFQFIFIKSAQT
EQLQANHQFTPDSIGFILLFLLEELTSQETVDVLEIGSGTGNLAQTLLNNSSKELNYMGIEVDDLLIDLSASIAEIIGSS
AQFIQEDAVRPQILKESDVIISDLPVGYYPNDDIAKRYAVSSSKEHTYAHHLLMEQSLKYLKKDGIAIFLVPENLLTSPQ
SDLLKEWLKGYADVIAVLTLPETIFGSRQNAKSIFVLKKQAEQKPETFVYPLTDLQNRENMANFIENFQKWSRENSHYSK
NMIE
MNFEKIETAYELILENIQTIENQLKTHIYDALIEQNSYYLGSSCDLDIVVVNNQKLRQLDLSQEEWRRTFQFIFIKSAQT
EQLQANHQFTPDSIGFILLFLLEELTSQETVDVLEIGSGTGNLAQTLLNNSSKELNYMGIEVDDLLIDLSASIAEIIGSS
AQFIQEDAVRPQILKESDVIISDLPVGYYPNDDIAKRYAVSSSKEHTYAHHLLMEQSLKYLKKDGIAIFLVPENLLTSPQ
SDLLKEWLKGYADVIAVLTLPETIFGSRQNAKSIFVLKKQAEQKPETFVYPLTDLQNRENMANFIENFQKWSRENSHYSK
NMIE
Nucleotide
Download Length: 975 bp
>NTDB_id=154581 AMM49_RS01185 WP_001008572.1 198384..199358(+) (comYH) [Streptococcus agalactiae strain NGBS128]
ATGAATTTTGAAAAAATTGAGACAGCCTATGAGCTGATTTTAGAAAATATCCAAACGATTGAGAACCAATTAAAAACTCA
TATTTATGATGCCTTAATTGAACAGAACTCTTATTACCTTGGTTCAAGTTGTGATTTAGATATTGTTGTGGTGAATAACC
AAAAATTACGTCAACTTGACTTAAGTCAAGAAGAATGGCGTCGCACTTTCCAGTTCATTTTTATCAAATCTGCGCAAACA
GAGCAATTACAAGCTAATCATCAGTTTACGCCAGATAGTATTGGTTTTATCTTGTTATTTCTTTTGGAAGAATTAACGAG
TCAAGAGACAGTGGATGTCTTGGAAATTGGAAGTGGAACTGGGAATTTAGCTCAGACTCTCCTCAATAACAGCTCGAAAG
AGTTAAATTATATGGGCATTGAAGTTGATGATCTTTTGATTGATCTATCAGCAAGCATTGCTGAAATTATAGGTTCTAGT
GCCCAATTTATCCAAGAGGATGCCGTTAGACCACAAATTTTGAAAGAAAGCGATGTAATCATTAGTGATTTACCAGTTGG
CTATTATCCTAATGATGATATTGCTAAACGATATGCTGTATCAAGTTCTAAAGAGCACACCTATGCTCACCATCTATTGA
TGGAGCAATCTCTTAAATATTTGAAAAAAGATGGAATCGCTATATTTTTAGTACCCGAAAACCTTTTAACAAGTCCACAA
AGTGATTTGCTGAAGGAGTGGTTAAAAGGATATGCAGATGTCATTGCCGTTTTAACTCTACCAGAAACTATTTTTGGAAG
TCGTCAAAATGCGAAATCTATATTTGTTCTCAAGAAGCAAGCAGAACAAAAACCAGAAACCTTTGTATATCCGCTGACAG
ATTTGCAAAATCGTGAGAATATGGCAAACTTCATTGAAAATTTTCAAAAATGGAGCAGAGAAAATAGTCATTACTCAAAA
AATATGATAGAATAG
ATGAATTTTGAAAAAATTGAGACAGCCTATGAGCTGATTTTAGAAAATATCCAAACGATTGAGAACCAATTAAAAACTCA
TATTTATGATGCCTTAATTGAACAGAACTCTTATTACCTTGGTTCAAGTTGTGATTTAGATATTGTTGTGGTGAATAACC
AAAAATTACGTCAACTTGACTTAAGTCAAGAAGAATGGCGTCGCACTTTCCAGTTCATTTTTATCAAATCTGCGCAAACA
GAGCAATTACAAGCTAATCATCAGTTTACGCCAGATAGTATTGGTTTTATCTTGTTATTTCTTTTGGAAGAATTAACGAG
TCAAGAGACAGTGGATGTCTTGGAAATTGGAAGTGGAACTGGGAATTTAGCTCAGACTCTCCTCAATAACAGCTCGAAAG
AGTTAAATTATATGGGCATTGAAGTTGATGATCTTTTGATTGATCTATCAGCAAGCATTGCTGAAATTATAGGTTCTAGT
GCCCAATTTATCCAAGAGGATGCCGTTAGACCACAAATTTTGAAAGAAAGCGATGTAATCATTAGTGATTTACCAGTTGG
CTATTATCCTAATGATGATATTGCTAAACGATATGCTGTATCAAGTTCTAAAGAGCACACCTATGCTCACCATCTATTGA
TGGAGCAATCTCTTAAATATTTGAAAAAAGATGGAATCGCTATATTTTTAGTACCCGAAAACCTTTTAACAAGTCCACAA
AGTGATTTGCTGAAGGAGTGGTTAAAAGGATATGCAGATGTCATTGCCGTTTTAACTCTACCAGAAACTATTTTTGGAAG
TCGTCAAAATGCGAAATCTATATTTGTTCTCAAGAAGCAAGCAGAACAAAAACCAGAAACCTTTGTATATCCGCTGACAG
ATTTGCAAAATCGTGAGAATATGGCAAACTTCATTGAAAATTTTCAAAAATGGAGCAGAGAAAATAGTCATTACTCAAAA
AATATGATAGAATAG
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| comYH | Streptococcus mutans UA159 |
66.984 |
97.222 |
0.651 |
| comYH | Streptococcus mutans UA140 |
66.984 |
97.222 |
0.651 |