Detailed information    

insolico Bioinformatically predicted

Overview

Name   recN   Type   Machinery gene
Locus tag   DB29_RS18230 Genome accession   NZ_CP012475
Coordinates   3720292..3721989 (+) Length   565 a.a.
NCBI ID   WP_011247302.1    Uniprot ID   Q5WF66
Organism   Shouchella clausii strain ENTPro     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 3715292..3726989
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DB29_RS18205 (DB29_03803) xseB 3715521..3715760 (+) 240 WP_011247307.1 exodeoxyribonuclease VII small subunit -
  DB29_RS18210 (DB29_03804) - 3715757..3716644 (+) 888 WP_011247306.1 polyprenyl synthetase family protein -
  DB29_RS18215 (DB29_03805) dxs 3716910..3718796 (+) 1887 WP_011247305.1 1-deoxy-D-xylulose-5-phosphate synthase -
  DB29_RS18220 (DB29_03806) - 3718801..3719613 (+) 813 WP_011247304.1 TlyA family RNA methyltransferase -
  DB29_RS18225 (DB29_03808) argR 3719826..3720275 (+) 450 WP_011247303.1 transcriptional regulator ArgR -
  DB29_RS18230 (DB29_03809) recN 3720292..3721989 (+) 1698 WP_011247302.1 DNA repair protein RecN Machinery gene
  DB29_RS18235 (DB29_03810) spoIVB 3722111..3723385 (+) 1275 WP_011247301.1 SpoIVB peptidase -
  DB29_RS18240 (DB29_03811) spo0A 3723587..3724378 (+) 792 WP_035201650.1 sporulation transcription factor Spo0A -
  DB29_RS18250 (DB29_03813) - 3724630..3725388 (+) 759 WP_035201647.1 hypothetical protein -
  DB29_RS18255 (DB29_03814) - 3725406..3725648 (-) 243 WP_011247298.1 DUF2627 domain-containing protein -

Sequence

Protein


Download         Length: 565 a.a.        Molecular weight: 63216.32 Da        Isoelectric Point: 4.6418

>NTDB_id=154561 DB29_RS18230 WP_011247302.1 3720292..3721989(+) (recN) [Shouchella clausii strain ENTPro]
MLMELSIKNFAIIRSLTVPFEKGLTVLTGETGAGKSIIIDAIALLLGGRGSAEFVRFGEKRAEIEGLFAIGENHPALKKL
DPIGVECEEGMLILRRDITDAGKSICRINGKLTTIGMLREVGQTLIDMHGQHEHQSLMRIEEHVELLDSFGGEALKKTRA
EYTRLFNEVQKMTDRINSLNQNSQEMARKADLYAYQLQEIEQAKLTPGEDEELLAKRYKLANSEKLYEALTRSYEHMYGE
ERGLDYMSGMLSHLETAASIDKELAPLYEQMSSSYYMLEEGTYAIREAIEAIDFDPETLAFIETRLAEIDKLKRKYGDSV
ETILEYAATIEEELEAIEHKDDRLANLTEKRDALVEDLLLEAEALTDLRKAAAAELMEAIEKQLQDLYMEKAQFQVAIEP
YPNKEDLSSLKRLGQDRIEFMISANPGEPLKPLAKVASGGELSRIMLALKSVFSAKEGMTSVIFDEVDTGVSGRVAQAIG
EKIQRISAGSQVLCISHLPQVAALADHHLYISKTEIDNRVFTSVKVLNENEKVDELARMLSGVEVTDLTRKNAEELLALA
QTKKM

Nucleotide


Download         Length: 1698 bp        

>NTDB_id=154561 DB29_RS18230 WP_011247302.1 3720292..3721989(+) (recN) [Shouchella clausii strain ENTPro]
ATGTTAATGGAACTGTCGATAAAAAATTTTGCCATTATCCGCTCTTTAACAGTCCCTTTTGAAAAAGGGTTGACCGTGTT
GACTGGGGAGACGGGCGCAGGCAAGTCCATTATCATCGATGCAATCGCATTATTGTTAGGCGGGAGAGGGTCAGCCGAGT
TTGTCCGCTTTGGCGAAAAACGAGCCGAAATTGAGGGCTTGTTTGCGATTGGCGAGAACCACCCGGCTCTAAAAAAACTC
GACCCAATTGGCGTTGAATGCGAAGAAGGAATGCTCATTCTCCGGCGTGATATTACAGACGCTGGAAAAAGCATTTGCCG
GATAAATGGCAAGCTGACAACGATTGGCATGTTGCGGGAAGTCGGGCAGACATTAATCGATATGCACGGCCAGCATGAGC
ACCAGTCATTAATGCGGATAGAAGAACATGTTGAACTATTAGACAGTTTCGGTGGCGAGGCCTTAAAAAAAACGCGTGCT
GAGTATACAAGGTTGTTTAATGAAGTCCAAAAAATGACGGACCGGATCAACAGTTTAAATCAAAATTCGCAAGAAATGGC
AAGAAAAGCCGATTTGTATGCGTATCAACTACAAGAAATCGAACAAGCGAAGTTAACGCCAGGAGAAGACGAAGAGTTGC
TGGCTAAACGTTATAAACTAGCCAATAGTGAGAAGCTTTATGAGGCCTTAACCCGTAGTTATGAACATATGTACGGCGAG
GAACGAGGCCTGGATTACATGAGCGGCATGCTTTCCCACTTAGAAACTGCTGCCTCGATTGACAAGGAATTAGCGCCTTT
ATATGAACAAATGTCTTCAAGCTACTATATGCTTGAAGAAGGTACGTATGCGATTCGTGAAGCGATTGAAGCAATTGATT
TTGATCCCGAAACACTTGCGTTTATTGAAACGAGGCTTGCTGAAATCGACAAGTTGAAACGCAAATATGGTGATTCGGTT
GAAACGATATTGGAATATGCCGCCACGATTGAGGAAGAGCTGGAAGCGATAGAACATAAGGATGACCGGTTAGCGAATTT
AACCGAAAAACGCGACGCCCTTGTAGAGGACTTGTTGCTTGAAGCGGAAGCATTAACTGATTTGCGCAAGGCGGCAGCAG
CTGAATTGATGGAAGCGATTGAAAAACAGCTGCAGGACCTGTATATGGAAAAAGCGCAGTTTCAAGTAGCGATTGAGCCT
TATCCAAATAAAGAAGATCTATCTAGCTTAAAACGGTTAGGCCAAGACCGAATTGAATTTATGATTTCGGCGAATCCAGG
TGAACCGTTAAAACCTCTTGCGAAAGTCGCTTCTGGAGGGGAATTGTCGCGGATTATGCTAGCGCTGAAGTCCGTTTTTT
CCGCAAAAGAAGGAATGACCTCTGTCATCTTTGATGAAGTGGATACGGGCGTGAGTGGCAGAGTCGCCCAGGCGATAGGT
GAAAAAATCCAACGAATATCTGCTGGCTCACAGGTGTTATGTATTTCTCATTTGCCACAAGTGGCAGCATTAGCTGACCA
CCATTTGTATATTTCCAAAACCGAAATCGATAACCGCGTGTTCACAAGCGTCAAGGTTTTAAATGAAAACGAAAAAGTGG
ACGAACTGGCACGGATGCTTTCTGGCGTCGAAGTGACAGATTTGACCAGGAAAAATGCAGAAGAATTGCTCGCGCTTGCT
CAAACAAAAAAAATGTAG

Domains

Predicted by InterproScan.

RecF/RecN/SMC N terminal domain (SMC_N)

(2-514)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q5WF66

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recN Bacillus subtilis subsp. subtilis str. 168

51.22

100

0.52

Multiple sequence alignment