Detailed information    

insolico Bioinformatically predicted

Overview

Name   comZ   Type   Regulator
Locus tag   DB29_RS17730 Genome accession   NZ_CP012475
Coordinates   3640313..3640495 (+) Length   60 a.a.
NCBI ID   WP_035201913.1    Uniprot ID   -
Organism   Shouchella clausii strain ENTPro     
Function   repression of comG operon (predicted from homology)   
Competence regulation

Genomic Context

Location: 3635313..3645495
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DB29_RS17710 (DB29_03703) argF 3635831..3636775 (+) 945 WP_011247395.1 ornithine carbamoyltransferase -
  DB29_RS17715 (DB29_03704) - 3636919..3637611 (+) 693 WP_011247394.1 hypothetical protein -
  DB29_RS17720 (DB29_03705) - 3637665..3638504 (+) 840 WP_011247393.1 NAD(P)-dependent oxidoreductase -
  DB29_RS17725 (DB29_03707) - 3638560..3640167 (-) 1608 WP_011247392.1 peptide chain release factor 3 -
  DB29_RS17730 comZ 3640313..3640495 (+) 183 WP_035201913.1 ComZ family protein Regulator
  DB29_RS17735 (DB29_03709) - 3640692..3640961 (-) 270 WP_035201768.1 hypothetical protein -
  DB29_RS17740 (DB29_03710) - 3641156..3642091 (+) 936 WP_035201766.1 beta-ketoacyl-ACP synthase III -
  DB29_RS17745 (DB29_03711) fabF 3642139..3643380 (+) 1242 WP_011247389.1 beta-ketoacyl-ACP synthase II -
  DB29_RS21485 (DB29_03712) - 3643531..3643700 (+) 170 Protein_3529 helix-turn-helix domain-containing protein -

Sequence

Protein


Download         Length: 60 a.a.        Molecular weight: 7018.17 Da        Isoelectric Point: 4.5738

>NTDB_id=154559 DB29_RS17730 WP_035201913.1 3640313..3640495(+) (comZ) [Shouchella clausii strain ENTPro]
MEQHERNLKFMEIAMKHVPEARKLLEGKGIEVTMDELQPLLSLLLHVMNEAYELGLNEQE

Nucleotide


Download         Length: 183 bp        

>NTDB_id=154559 DB29_RS17730 WP_035201913.1 3640313..3640495(+) (comZ) [Shouchella clausii strain ENTPro]
ATGGAGCAACACGAAAGAAATTTGAAGTTTATGGAAATCGCCATGAAGCATGTACCTGAAGCGCGTAAATTGCTAGAAGG
CAAAGGCATAGAAGTAACAATGGATGAATTGCAGCCGCTGCTTTCATTGTTGCTTCATGTGATGAACGAAGCATACGAAC
TTGGGTTAAACGAGCAGGAATGA

Domains

Predicted by InterproScan.

ComZ (ComZ)

(5-59)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comZ Bacillus subtilis subsp. subtilis str. 168

51.786

93.333

0.483

Multiple sequence alignment