Detailed information    

insolico Bioinformatically predicted

Overview

Name   ceuB   Type   Machinery gene
Locus tag   DB29_RS16295 Genome accession   NZ_CP012475
Coordinates   3335520..3336473 (+) Length   317 a.a.
NCBI ID   WP_011247737.1    Uniprot ID   Q5WDY1
Organism   Shouchella clausii strain ENTPro     
Function   DNA uptake (predicted from homology)   
DNA binding and uptake

Related MGE

Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type MGE coordinates Gene coordinates Relative position Distance (bp)
Prophage 3337413..3347664 3335520..3336473 flank 940


Gene organization within MGE regions


Location: 3335520..3347664
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DB29_RS16295 (DB29_03411) ceuB 3335520..3336473 (+) 954 WP_011247737.1 ABC transporter permease Machinery gene
  DB29_RS16300 (DB29_03412) - 3336463..3337416 (+) 954 WP_051881152.1 iron chelate uptake ABC transporter family permease subunit -
  DB29_RS16305 (DB29_03413) - 3337413..3338234 (+) 822 WP_208610215.1 ABC transporter ATP-binding protein -
  DB29_RS16310 (DB29_03414) - 3338351..3339322 (+) 972 WP_011247734.1 siderophore ABC transporter substrate-binding protein -
  DB29_RS16315 (DB29_03415) tnpA 3339545..3339997 (+) 453 WP_011245494.1 IS200/IS605 family transposase -
  DB29_RS16320 (DB29_03416) - 3340197..3340805 (+) 609 WP_011247733.1 restriction endonuclease -
  DB29_RS16325 (DB29_03417) - 3340844..3341473 (-) 630 WP_011247732.1 deoxynucleoside kinase -
  DB29_RS16330 (DB29_03418) - 3341485..3342108 (-) 624 WP_011247731.1 deoxynucleoside kinase -
  DB29_RS16335 (DB29_03419) - 3342264..3343439 (+) 1176 WP_035201992.1 MalY/PatB family protein -
  DB29_RS21810 (DB29_03420) - 3343526..3343678 (+) 153 WP_156323123.1 hypothetical protein -
  DB29_RS16340 (DB29_03421) - 3343718..3344209 (+) 492 WP_011247728.1 YwpF-like family protein -
  DB29_RS16345 (DB29_03422) - 3344334..3345548 (+) 1215 WP_306204237.1 MFS transporter -
  DB29_RS16350 (DB29_03423) ytkD 3345614..3346096 (+) 483 WP_011247726.1 RNA deprotection pyrophosphohydrolase -
  DB29_RS16355 (DB29_03424) - 3346122..3346889 (-) 768 WP_050749056.1 ABC transporter permease -
  DB29_RS16360 (DB29_03425) - 3346906..3347664 (-) 759 WP_011247724.1 ABC transporter ATP-binding protein -

Sequence

Protein


Download         Length: 317 a.a.        Molecular weight: 35003.22 Da        Isoelectric Point: 10.1201

>NTDB_id=154553 DB29_RS16295 WP_011247737.1 3335520..3336473(+) (ceuB) [Shouchella clausii strain ENTPro]
MKIKYLLPLLLILSFASLFIGVQDISPLDLFRLDDEDVQTLVISRIPRLLSVLIVGVSLSVCGLIMQQLTQNKFVSPTTA
GTMDWARLGILVAVVVFTQATTLQRMFIAFLFALFGTFLFMKILERIRFKNVVFVPLVGLMLGSVVNSITTFLAYRYDLV
QSLSSWMQGSFSLVLKGRYEILYIGIPLVVIAFLFANRFTVAGMGKDFSTNLGLNYNQIMNIGLFIVAMITATIVVTIGS
IPFLGLVIPNIVSIIRGDNLKNSLPHTALLGAIFLLACDILGRVLIYPYEIPIGLVVGVVGSAIFLYLLLRRRSHAA

Nucleotide


Download         Length: 954 bp        

>NTDB_id=154553 DB29_RS16295 WP_011247737.1 3335520..3336473(+) (ceuB) [Shouchella clausii strain ENTPro]
ATGAAAATAAAATATTTACTCCCTTTGCTTTTAATTTTATCGTTTGCATCTTTATTTATTGGCGTACAGGATATATCGCC
ACTTGACTTATTTCGTTTAGACGATGAAGATGTGCAAACACTTGTCATTAGCCGTATCCCCCGTCTATTGAGTGTATTGA
TTGTTGGTGTTAGTTTAAGCGTTTGCGGTTTAATTATGCAGCAGCTTACACAAAACAAATTTGTTTCGCCGACAACAGCT
GGAACTATGGATTGGGCTCGGCTTGGCATTCTTGTCGCCGTGGTTGTTTTTACACAAGCGACCACGTTGCAAAGGATGTT
TATTGCCTTTCTTTTTGCGTTGTTTGGAACGTTTCTTTTTATGAAAATACTGGAGCGCATCCGCTTTAAAAACGTTGTGT
TTGTCCCGCTTGTCGGGCTTATGTTAGGCAGTGTGGTCAACTCAATCACGACTTTTCTAGCTTACCGGTATGATTTAGTG
CAAAGCTTATCTTCTTGGATGCAAGGGAGCTTTTCACTCGTTCTTAAAGGGCGCTATGAAATTTTATACATAGGCATTCC
CCTTGTTGTCATTGCCTTTTTATTCGCAAATCGCTTTACGGTAGCAGGAATGGGGAAGGATTTTTCGACAAACTTGGGCT
TAAATTATAACCAAATTATGAATATCGGCCTTTTCATTGTCGCGATGATCACGGCTACGATTGTCGTCACAATTGGCTCA
ATTCCTTTTTTAGGGCTAGTCATTCCTAACATCGTTTCGATTATAAGAGGGGACAACTTAAAAAACAGTTTGCCTCATAC
AGCGCTATTAGGCGCCATTTTCTTGCTCGCTTGTGATATTTTAGGGCGTGTTCTCATTTATCCATATGAAATTCCGATTG
GACTGGTCGTTGGGGTTGTCGGGAGCGCGATCTTTTTGTACTTGCTCTTAAGGAGACGATCTCATGCAGCCTAA

Domains

Predicted by InterproScan.

FecCD transport family (FecCD)

(9-311)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q5WDY1

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ceuB Campylobacter jejuni subsp. jejuni 81-176

49.367

99.685

0.492

Multiple sequence alignment