Detailed information    

insolico Bioinformatically predicted

Overview

Name   recJ   Type   Machinery gene
Locus tag   DB29_RS02100 Genome accession   NZ_CP012475
Coordinates   401792..404149 (-) Length   785 a.a.
NCBI ID   WP_035204527.1    Uniprot ID   -
Organism   Shouchella clausii strain ENTPro     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 396792..409149
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DB29_RS02080 (DB29_00447) - 397269..398276 (-) 1008 WP_035204531.1 LacI family DNA-binding transcriptional regulator -
  DB29_RS02085 (DB29_00448) dtd 398504..398944 (-) 441 WP_011246415.1 D-aminoacyl-tRNA deacylase -
  DB29_RS02090 (DB29_00449) - 398966..401155 (-) 2190 WP_081427594.1 bifunctional (p)ppGpp synthetase/guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase -
  DB29_RS02095 (DB29_00450) - 401287..401802 (-) 516 WP_011246413.1 adenine phosphoribosyltransferase -
  DB29_RS02100 (DB29_00451) recJ 401792..404149 (-) 2358 WP_035204527.1 single-stranded-DNA-specific exonuclease RecJ Machinery gene
  DB29_RS02105 (DB29_00452) - 404212..404514 (-) 303 WP_011246411.1 lipopolysaccharide assembly LapA domain-containing protein -
  DB29_RS21925 (DB29_00453) secF 404530..405465 (-) 936 WP_073303973.1 protein translocase subunit SecF -
  DB29_RS21930 (DB29_00454) secD 405455..406756 (-) 1302 WP_011246409.1 protein translocase subunit SecD -
  DB29_RS02115 (DB29_00455) - 406791..407081 (-) 291 WP_011246408.1 post-transcriptional regulator -
  DB29_RS02120 (DB29_00456) spoVB 407250..408800 (+) 1551 WP_035204525.1 stage V sporulation protein B -
  DB29_RS02125 (DB29_00457) - 408837..409076 (-) 240 WP_035204523.1 hypothetical protein -

Sequence

Protein


Download         Length: 785 a.a.        Molecular weight: 87796.53 Da        Isoelectric Point: 5.0678

>NTDB_id=154527 DB29_RS02100 WP_035204527.1 401792..404149(-) (recJ) [Shouchella clausii strain ENTPro]
MLQSKTRWRILEQNELLAQELADELRVSMLTARLLVRRGIQTVQAAKRFLHYEEPTFYDPFLLKGMEETIERIALAVKRK
ERILVFGDYDADGVSSTSVMLTALQTYGADCDYYIPNRFTEGYGPNCPALDFAKRQGYHLVITVDTGISALNEAAHAKDI
GLDFIITDHHEPPPVLPEALAIINPKQPGCPYPFKELAGVGVAFKVAHALLGRLPEELLDYAVIGTIADLVPLIDENRLL
AKKGLRAIESSGRPGIRALKEVCGMKQEAMDADHIGFAIGPRLNAAGRLDSANPAVELLLADDEEEAKALATEIDSLNKE
RQAIVSKMTEEAIRLVETTYGTKIPHAIVVAKEGWNPGVIGIVASRLVEQFYRPTIVMSIDESSGLAKGSARSIEGFDMY
QELANNRDILPHFGGHPMAAGMTLKTEDIDDLRSRLIKQAKETLTDDMLTPATDIDLVAEVEDVTVQVIGELQALAPFGV
ANRKPIVLVEGAHISDMRRIGSNQNHLKIQFTGAQKPLDGIAFRMGHLFEEITPHAKLSAIGTVSLNEWNGKVKPQLIID
DLAVLEWQLFDWRSIQPNRLNSRLLDLPREKLVAISFQEGTKERLGLDVPVYDYRQAPSFFKAYVVLLDLPSNRVELETL
FSKKGEPSRVYVVFSEEEESFFQTNPNREQFKWYYGFIKKNQRFSLNQLGAKLEKHKGWSARTVEFMTTVFLELGFIKLD
DGIVEAVENPEKKALTASPTYQAKQEKAWLENEFVFASYQQLKEWFQAAIDGSAETKEESILNGL

Nucleotide


Download         Length: 2358 bp        

>NTDB_id=154527 DB29_RS02100 WP_035204527.1 401792..404149(-) (recJ) [Shouchella clausii strain ENTPro]
ATGTTGCAATCAAAAACAAGATGGCGCATTTTAGAACAAAACGAGCTGTTGGCGCAAGAGCTCGCAGACGAGCTGCGTGT
ATCGATGTTAACGGCCCGTCTTCTTGTACGCCGGGGAATCCAAACCGTCCAGGCGGCCAAGCGCTTTTTACACTACGAAG
AGCCGACGTTTTACGATCCCTTTTTGTTGAAAGGGATGGAGGAAACGATTGAACGAATTGCCCTCGCAGTCAAACGAAAA
GAACGCATTCTTGTTTTTGGGGACTATGATGCTGATGGCGTTAGTTCGACTTCCGTGATGCTAACAGCGTTACAAACGTA
TGGCGCCGACTGTGATTACTATATACCAAACCGTTTTACAGAAGGATACGGGCCCAATTGCCCAGCGCTAGACTTTGCAA
AAAGGCAAGGTTATCACTTAGTGATAACAGTCGATACAGGCATTTCTGCTTTGAATGAAGCTGCCCATGCCAAAGACATC
GGCCTGGATTTTATTATCACTGACCACCATGAGCCGCCGCCGGTTTTGCCAGAAGCATTGGCGATCATTAATCCTAAGCA
GCCTGGTTGTCCGTATCCATTTAAAGAGCTTGCTGGCGTAGGCGTTGCCTTTAAAGTTGCACACGCTTTGCTCGGGCGCC
TGCCTGAAGAGCTGCTCGATTACGCTGTGATCGGCACGATCGCCGACTTGGTGCCTCTCATTGATGAAAATCGGCTGCTG
GCCAAAAAGGGGCTTCGCGCGATTGAATCAAGCGGCCGCCCTGGGATCCGTGCCTTAAAGGAAGTATGCGGCATGAAGCA
GGAAGCAATGGATGCCGACCATATCGGCTTTGCGATTGGCCCTCGTCTAAATGCAGCAGGGCGGCTCGATTCTGCTAATC
CAGCCGTTGAGCTGCTCCTTGCTGATGATGAAGAAGAAGCAAAAGCGCTAGCCACAGAAATCGATAGCCTCAATAAAGAA
CGGCAAGCAATTGTTAGCAAAATGACAGAAGAAGCGATTCGCCTTGTGGAAACAACCTATGGCACAAAGATCCCCCATGC
CATCGTTGTAGCGAAGGAAGGCTGGAATCCAGGGGTCATCGGGATTGTCGCTTCTCGCCTTGTAGAGCAGTTTTACCGTC
CGACAATTGTCATGAGCATTGACGAATCTTCAGGACTTGCGAAAGGCTCGGCCAGAAGCATCGAAGGGTTTGACATGTAC
CAAGAATTGGCGAATAACCGGGATATACTTCCTCATTTTGGCGGACACCCGATGGCGGCAGGGATGACACTTAAAACCGA
GGACATTGACGACTTACGTTCTCGTTTAATCAAGCAAGCCAAGGAGACACTAACGGACGACATGCTTACGCCAGCCACGG
ATATAGACCTCGTTGCAGAAGTGGAGGATGTAACCGTTCAAGTGATTGGCGAGTTGCAGGCACTTGCCCCGTTTGGCGTT
GCCAACCGTAAACCGATTGTACTTGTTGAGGGTGCGCATATTTCCGATATGCGCCGGATTGGCAGCAACCAAAACCATTT
AAAAATCCAATTTACTGGCGCCCAAAAGCCGCTTGACGGAATTGCCTTTAGAATGGGGCATTTGTTTGAAGAGATCACGC
CACATGCAAAGTTATCTGCCATCGGAACGGTATCGTTGAATGAATGGAACGGAAAAGTAAAGCCACAACTTATTATTGAC
GATCTTGCCGTATTGGAGTGGCAACTATTTGATTGGCGCAGCATCCAGCCAAACCGTTTAAACAGCCGGTTGCTTGACTT
GCCTCGTGAAAAACTCGTCGCTATTTCCTTTCAAGAAGGGACAAAAGAAAGACTTGGGTTGGACGTACCCGTATATGATT
ACCGGCAAGCGCCTTCCTTTTTTAAAGCTTACGTCGTGTTGCTCGATTTGCCTAGCAACCGGGTTGAACTGGAAACTCTG
TTTTCTAAGAAAGGGGAGCCAAGCCGTGTTTATGTTGTGTTCTCTGAGGAAGAAGAATCGTTTTTTCAAACGAATCCAAA
CCGCGAGCAGTTCAAATGGTATTATGGTTTTATTAAGAAAAACCAACGCTTTTCACTGAATCAACTCGGCGCGAAGCTCG
AAAAGCACAAAGGCTGGTCAGCCCGCACGGTCGAATTTATGACCACTGTATTTTTAGAACTTGGTTTTATCAAGCTTGAC
GACGGCATCGTTGAAGCAGTAGAAAACCCTGAAAAAAAAGCGTTGACTGCATCGCCGACCTACCAAGCCAAGCAGGAAAA
AGCATGGCTTGAGAATGAATTTGTTTTTGCTTCTTATCAACAGTTAAAAGAATGGTTCCAGGCTGCCATCGATGGGAGCG
CTGAAACAAAAGAGGAGTCGATCCTAAATGGATTATAA

Domains

Predicted by InterproScan.

DHHA1 domain (DHHA1)

(315-438)

Single-strand DNA-specific exonuclease, C terminal domain (ssDNA-exonuc_C)

(568-766)

RecJ OB domain (RecJ_OB)

(455-561)

DHH family (DHH)

(82-226)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recJ Bacillus subtilis subsp. subtilis str. 168

50.381

100

0.506

Multiple sequence alignment