Detailed information    

insolico Bioinformatically predicted

Overview

Name   treR   Type   Regulator
Locus tag   A7319_RS23635 Genome accession   NZ_CP015638
Coordinates   5331515..5332219 (+) Length   234 a.a.
NCBI ID   WP_024077261.1    Uniprot ID   A0ACA7PCT0
Organism   Pseudomonas fluorescens strain L111     
Function   regulate expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 5326515..5337219
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  A7319_RS23620 (A7319_23600) - 5326789..5328009 (-) 1221 WP_069076949.1 maltoporin -
  A7319_RS23625 (A7319_23605) treC 5328080..5329726 (-) 1647 WP_069076950.1 alpha,alpha-phosphotrehalase -
  A7319_RS23630 (A7319_23610) treP 5329834..5331276 (-) 1443 WP_024077260.1 PTS system trehalose-specific EIIBC component -
  A7319_RS23635 (A7319_23615) treR 5331515..5332219 (+) 705 WP_024077261.1 trehalose operon repressor Regulator
  A7319_RS23640 (A7319_23620) - 5332666..5333970 (+) 1305 WP_024077262.1 hypothetical protein -
  A7319_RS23645 (A7319_23625) - 5334350..5334982 (-) 633 WP_024077263.1 NAD(P)H-dependent oxidoreductase -
  A7319_RS23650 (A7319_23630) - 5335064..5336044 (-) 981 WP_024077264.1 sterol desaturase family protein -
  A7319_RS23655 (A7319_23635) - 5336876..5337076 (-) 201 WP_069076951.1 transcriptional regulator -

Sequence

Protein


Download         Length: 234 a.a.        Molecular weight: 26800.15 Da        Isoelectric Point: 6.0897

>NTDB_id=154372 A7319_RS23635 WP_024077261.1 5331515..5332219(+) (treR) [Pseudomonas fluorescens strain L111]
MSKYNQIYTDLLANITTERLQRGTRLPSETELMDAYQASRGTVRRAIEQLQERGFAQKIHGKGTFVLSPNPIEFQLGGIV
SFHETHADLGDDVRTEVVEFTQFPLEGSLQQHIEAEPGTLITRIKRVRRIGGKRVILDINHFVADLIPGLDRDIAEQSIY
AFIEQTLQLQISYAQRTIEALPRSKDDQAHLDLDGQSHVIVVSNQTFLQDGRQFEYTESRHTLDKFYFSDIARR

Nucleotide


Download         Length: 705 bp        

>NTDB_id=154372 A7319_RS23635 WP_024077261.1 5331515..5332219(+) (treR) [Pseudomonas fluorescens strain L111]
ATGAGCAAATACAACCAGATCTATACCGATCTGCTTGCCAACATCACCACTGAACGCCTGCAACGTGGCACCCGTCTTCC
CTCCGAAACCGAATTGATGGATGCCTACCAGGCCAGCCGTGGCACCGTGCGTCGGGCCATCGAGCAGTTGCAGGAGCGTG
GGTTCGCGCAAAAAATCCACGGCAAGGGCACTTTCGTGTTGTCGCCCAACCCCATCGAGTTCCAATTGGGTGGCATCGTC
AGCTTCCACGAAACCCACGCCGACCTGGGCGACGACGTACGCACCGAAGTGGTCGAGTTCACCCAGTTCCCACTGGAAGG
CTCATTGCAACAACACATCGAAGCCGAACCCGGCACCCTGATCACGCGGATCAAGCGCGTCCGGCGCATCGGCGGCAAAC
GGGTGATCCTCGACATCAACCACTTTGTCGCCGACCTGATTCCCGGCCTGGACCGCGACATCGCCGAGCAGTCGATCTAC
GCGTTCATCGAGCAGACGCTGCAGCTGCAGATCAGCTATGCGCAACGCACCATCGAAGCCCTGCCCCGCAGCAAAGACGA
CCAGGCGCACCTCGACCTCGACGGCCAGAGCCATGTGATCGTGGTGAGTAACCAGACGTTTTTGCAGGATGGGCGCCAGT
TCGAGTACACCGAATCGCGGCATACGCTGGATAAGTTTTACTTTTCGGATATTGCCCGACGGTAA

Domains

Predicted by InterProScan.

UTRA domain (UTRA)

(89-226)

Bacterial regulatory proteins, gntR family (GntR)

(3-66)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  treR Streptococcus mutans UA159

37.607

100

0.376

Multiple sequence alignment