Detailed information NTG0154348

Bioinformatically predicted

Overview

• Name: clpC
• Type: Regulator
• Locus tag: A7319_RS16390
• Genome accession: NZ_CP015638
• Coordinates: 3748517..3750955 (-)
• Length: 812 a.a.
• NCBI ID: WP_069076345.1
• Uniprot ID: -
• Organism: Pseudomonas fluorescens strain L111
• Function: degradation of ComK; degradation of DegU (predicted from homology) Competence regulation

Genomic Context

Location: 3743517..3755955

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
A7319_RS16365 (A7319_16350)	tssK	3743808..3745136 (-)	1329	WP_069076348.1	type VI secretion system baseplate subunit TssK	-
A7319_RS16370 (A7319_16355)	tssJ	3745138..3745623 (-)	486	WP_069077420.1	type VI secretion system lipoprotein TssJ	-
A7319_RS16375 (A7319_16360)	tagH	3745629..3746819 (-)	1191	WP_069076347.1	type VI secretion system-associated FHA domain protein TagH	-
A7319_RS16380 (A7319_16365)	-	3746835..3746966 (-)	132	WP_024075948.1	hypothetical protein	-
A7319_RS16385 (A7319_16370)	-	3746994..3748520 (-)	1527	WP_069076346.1	sigma 54-interacting transcriptional regulator	-
A7319_RS16390 (A7319_16375)	clpC	3748517..3750955 (-)	2439	WP_069076345.1	AAA family ATPase	Regulator
A7319_RS16395 (A7319_16380)	tssG	3750968..3751975 (-)	1008	WP_024075951.1	type VI secretion system baseplate subunit TssG	-
A7319_RS16400 (A7319_16385)	tssF	3751939..3753726 (-)	1788	WP_069076344.1	type VI secretion system baseplate subunit TssF	-
A7319_RS16405 (A7319_16390)	tssE	3753716..3754117 (-)	402	WP_024075953.1	type VI secretion system baseplate subunit TssE	-
A7319_RS16410 (A7319_16395)	tssC	3754132..3755607 (-)	1476	WP_024075954.1	type VI secretion system contractile sheath large subunit	-

Sequence

Protein

• Length: 812 a.a.
• Molecular weight: 88133.22 Da
• Isoelectric Point: 5.6544

>NTDB_id=154348 A7319_RS16390 WP_069076345.1 3748517..3750955(-) (clpC) [Pseudomonas fluorescens strain L111]
MMNVDLQQLIRTLAAQTRSDLERSAERCIARGGREVLVEDLLLALLEHADGVLAKALAEANVALHELQATLQPKTAQCAT
HNPVFAQALVQWLQQALMVAHLELGRHDVDQGALLLALLRHPLEHAGSGYQGILSRLDADRVRDFLLSQGAQVQAVVAES
WLQRFTQDLTRQAREGLIDPVICREGEIRQLIDILVRRRKNNPILVGEAGVGKTAIVEGFALQVVASQVPPALQDVRVLT
LDMGLLQAGAGIKGEFERRLKGVIDEVNASPQAVILFIDEAHMLVGAAGPGGASDAANLLKPALARGQLRTIAATTWSEY
KQYIEKDPALARRFQPVRVGEPSVEAAVSILRGLVPVYEASHDVYVRDDAVVAAAHMSARYLAGRQLPDKAVDVLDTACA
RARTCLSARPEALQCLVAELAEGTRQHLALRRDAEVGLPVDEVALQALSLRLDALEQERQALEQCWVEQREQPTASPTVC
PRLVAQVISAWTGIPVEQVALEPSEKVLGFADALRARILGQEPVVQALDRSLRAVAAGLNEPDAPVGVFLLAGPSGVGKT
ETALALADLLYGGQRFVTLINMSEYQEKHSLSRLIGAPPGYVGYGEGGVLTEAVRQRPYSVVLLDEVEKADPEVLNLFYQ
VFDKGLANDGEGREIDFRNTLILMTSNLGSDCISEACADGLRPDIEVLQAAILPALRAHFKPALLARMRVVPYYPVTGEV
LNDVARLKLARLGQRLQQRQLAFTHTPELVAHMVRLCTHGDSGARAIDQWIESDLLPQIADRLLTATVGHAGLSRVHARL
DSSGRPVCEFGQ

Nucleotide

• Length: 2439 bp

>NTDB_id=154348 A7319_RS16390 WP_069076345.1 3748517..3750955(-) (clpC) [Pseudomonas fluorescens strain L111]
ATGATGAATGTAGACCTGCAACAATTGATACGGACATTGGCGGCGCAAACCCGCAGCGACCTGGAACGCTCGGCTGAACG
TTGTATCGCCCGGGGCGGTCGCGAAGTGCTGGTGGAGGACCTGCTGCTGGCGCTGCTGGAGCACGCCGATGGCGTGTTGG
CCAAGGCGCTGGCAGAGGCCAACGTAGCGCTGCACGAACTGCAGGCGACGCTGCAGCCAAAGACCGCGCAGTGTGCAACC
CACAACCCGGTGTTCGCCCAGGCTTTGGTGCAGTGGTTGCAACAGGCGTTGATGGTTGCGCACCTTGAACTGGGGCGACA
TGACGTTGACCAAGGTGCCCTGTTGCTCGCGCTGCTACGTCATCCCCTGGAGCACGCCGGCAGCGGTTATCAAGGTATTT
TGAGCCGTTTGGACGCTGATCGCGTACGTGACTTCTTATTGAGCCAGGGCGCACAAGTCCAGGCAGTGGTGGCTGAATCA
TGGTTGCAGCGTTTTACCCAGGACCTGACGCGCCAGGCCCGTGAAGGCTTGATCGACCCTGTCATCTGCCGGGAGGGTGA
AATCCGGCAATTGATCGACATCCTCGTGCGTCGACGCAAGAACAACCCGATCCTGGTCGGAGAAGCCGGGGTCGGGAAAA
CGGCGATTGTCGAAGGCTTCGCCCTGCAAGTGGTCGCATCGCAGGTACCGCCAGCCCTCCAGGATGTGCGCGTGCTGACC
CTTGATATGGGGCTGCTGCAAGCGGGGGCTGGTATCAAGGGCGAATTCGAGCGCCGCCTCAAGGGGGTGATCGACGAAGT
CAACGCCTCGCCCCAGGCCGTGATCCTGTTTATCGACGAGGCTCATATGCTGGTGGGGGCCGCGGGGCCGGGTGGTGCGT
CGGATGCCGCCAACCTGCTCAAGCCTGCGTTGGCCCGCGGTCAACTGCGGACCATCGCCGCCACCACCTGGTCGGAGTAC
AAGCAATACATCGAAAAGGACCCCGCATTGGCGCGGCGTTTTCAACCGGTACGGGTGGGCGAACCGAGTGTCGAGGCCGC
GGTATCGATCCTGCGTGGACTGGTGCCGGTCTATGAGGCCAGCCATGACGTGTACGTGCGCGATGATGCGGTTGTCGCGG
CAGCGCACATGAGCGCGCGGTATTTGGCCGGGCGCCAGCTACCGGATAAAGCGGTGGATGTGCTGGATACGGCGTGCGCA
AGGGCTCGCACGTGCTTGTCGGCGCGGCCCGAAGCCTTGCAATGCCTTGTCGCCGAGCTTGCCGAAGGGACGCGGCAACA
CCTGGCGCTGCGCAGGGATGCCGAGGTCGGGCTGCCGGTCGATGAGGTGGCCCTGCAAGCCTTGAGCCTGCGACTGGATG
CCCTGGAGCAGGAGCGCCAGGCCCTGGAGCAGTGCTGGGTTGAACAGCGCGAGCAGCCGACGGCAAGCCCGACGGTGTGC
CCGCGCCTGGTGGCCCAGGTCATCAGTGCGTGGACCGGGATTCCCGTCGAGCAAGTGGCCCTTGAACCCAGCGAAAAAGT
CCTGGGGTTCGCCGATGCCTTGCGAGCACGCATTCTGGGACAGGAGCCGGTCGTGCAGGCGCTTGATCGCAGCCTGCGGG
CCGTAGCTGCCGGCCTCAACGAACCCGATGCGCCGGTAGGTGTATTCCTGCTGGCCGGCCCCAGCGGTGTGGGCAAGACC
GAAACCGCGCTGGCGCTGGCCGACCTGCTGTACGGAGGCCAGCGGTTCGTCACCCTCATCAATATGTCGGAGTATCAGGA
AAAACACTCACTGTCTCGATTGATCGGTGCACCTCCGGGTTACGTGGGCTACGGCGAAGGCGGTGTCCTGACCGAAGCGG
TGCGGCAACGCCCTTATTCGGTGGTGTTGCTCGACGAGGTCGAGAAGGCAGACCCGGAGGTGTTGAACCTGTTCTACCAA
GTCTTCGACAAGGGCTTGGCCAATGATGGCGAAGGGCGGGAGATCGATTTCCGTAATACGTTGATCCTGATGACCTCCAA
TCTTGGCAGCGACTGCATCAGTGAGGCGTGCGCCGACGGCCTGCGCCCGGACATCGAGGTATTGCAAGCCGCGATCCTCC
CCGCGCTGCGGGCACACTTCAAACCGGCGTTGCTGGCCCGGATGCGGGTGGTGCCCTATTACCCGGTGACGGGTGAGGTG
CTCAATGACGTGGCACGCCTCAAGCTTGCGCGCCTTGGCCAGCGATTGCAGCAACGCCAGTTGGCGTTTACCCACACGCC
CGAGCTGGTGGCGCACATGGTCCGGCTCTGCACACACGGTGACAGCGGAGCGCGCGCGATCGATCAGTGGATCGAGTCGG
ACCTGCTGCCGCAGATCGCTGATCGGCTGCTGACTGCAACGGTGGGCCATGCAGGTCTGTCACGGGTTCATGCACGGCTG
GATAGCAGCGGTCGGCCAGTCTGCGAGTTCGGCCAATGA

Domains

Predicted by InterProScan.

• C-terminal, D2-small domain, of ClpB protein (ClpB_D2-small) (719-789)

• AAA lid domain (AAA_lid_9) (343-435)

• AAA domain (Cdc48 subfamily) (AAA_2) (545-710)

• ATPase family associated with various cellular activities (AAA) (AAA) (204-316)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
clpC	Bacillus subtilis subsp. subtilis str. 168	37.531	97.783	0.367