Detailed information
Bioinformatically predicted
Overview
| Name | ruvB | Type | Machinery gene |
| Locus tag | A7317_RS23545 | Genome accession | NZ_CP015637 |
| Coordinates | 5297621..5298679 (+) | Length | 352 a.a. |
| NCBI ID | WP_024077146.1 | Uniprot ID | A0A0H5AFF7 |
| Organism | Pseudomonas fluorescens strain L321 | ||
| Function | homologous recombination (predicted from homology) Homologous recombination |
||
Genomic Context
Location: 5292621..5303679
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| A7317_RS23515 (A7317_23495) | - | 5292763..5293104 (+) | 342 | WP_041161008.1 | ribbon-helix-helix domain-containing protein | - |
| A7317_RS23520 (A7317_23500) | - | 5293274..5293495 (+) | 222 | WP_010208103.1 | FmdB family zinc ribbon protein | - |
| A7317_RS23525 (A7317_23505) | aspS | 5293603..5295378 (+) | 1776 | WP_024077149.1 | aspartate--tRNA ligase | - |
| A7317_RS23530 (A7317_23510) | - | 5295514..5296260 (+) | 747 | WP_024077148.1 | YebC/PmpR family DNA-binding transcriptional regulator | - |
| A7317_RS23535 (A7317_23515) | ruvC | 5296417..5296941 (+) | 525 | WP_024077147.1 | crossover junction endodeoxyribonuclease RuvC | - |
| A7317_RS23540 (A7317_23520) | ruvA | 5297009..5297620 (+) | 612 | WP_003175802.1 | Holliday junction branch migration protein RuvA | - |
| A7317_RS23545 (A7317_23525) | ruvB | 5297621..5298679 (+) | 1059 | WP_024077146.1 | Holliday junction branch migration DNA helicase RuvB | Machinery gene |
| A7317_RS23550 (A7317_23530) | ybgC | 5298832..5299287 (+) | 456 | WP_032890914.1 | tol-pal system-associated acyl-CoA thioesterase | - |
| A7317_RS23555 (A7317_23535) | tolQ | 5299289..5299984 (+) | 696 | WP_024077143.1 | protein TolQ | - |
| A7317_RS23560 (A7317_23540) | tolR | 5300008..5300460 (+) | 453 | WP_160384999.1 | protein TolR | - |
| A7317_RS23565 (A7317_23545) | tolA | 5300460..5301533 (+) | 1074 | WP_024077142.1 | cell envelope integrity protein TolA | - |
| A7317_RS23570 (A7317_23550) | tolB | 5301551..5302831 (+) | 1281 | WP_041161007.1 | Tol-Pal system beta propeller repeat protein TolB | - |
| A7317_RS30270 | pal | 5302887..5303387 (+) | 501 | WP_003209827.1 | peptidoglycan-associated lipoprotein Pal | - |
Sequence
Protein
Download Length: 352 a.a. Molecular weight: 38983.73 Da Isoelectric Point: 4.9689
>NTDB_id=154274 A7317_RS23545 WP_024077146.1 5297621..5298679(+) (ruvB) [Pseudomonas fluorescens strain L321]
MIEADRLIAATGPRDREEIQDRAIRPLSLADYIGQPTVREQMELFIQAARGRSESLDHTLIFGPPGLGKTTLANIIAQEM
GVSIKSTSGPVLERPGDLAALLTNLEPHDVLFIDEIHRLSPIVEEVLYPAMEDFQLDIMIGEGPAARSIKLDLPPFTLVG
ATTRAGMLTNPLRDRFGIVQRLEFYSTADLATIVSRSAGILGLPLDPEGAFEIARRARGTPRIANRLLRRVRDFAEVRAK
GHITKPVADLALNLLDVDEHGFDHQDRRLLLTMIEKFDGGPVGVDSLAAAISEERHTIEDVLEPYLIQQGYIMRTPRGRV
VTRHAYLHFGLNIPSRLGEMPVVDEFLDAVDD
MIEADRLIAATGPRDREEIQDRAIRPLSLADYIGQPTVREQMELFIQAARGRSESLDHTLIFGPPGLGKTTLANIIAQEM
GVSIKSTSGPVLERPGDLAALLTNLEPHDVLFIDEIHRLSPIVEEVLYPAMEDFQLDIMIGEGPAARSIKLDLPPFTLVG
ATTRAGMLTNPLRDRFGIVQRLEFYSTADLATIVSRSAGILGLPLDPEGAFEIARRARGTPRIANRLLRRVRDFAEVRAK
GHITKPVADLALNLLDVDEHGFDHQDRRLLLTMIEKFDGGPVGVDSLAAAISEERHTIEDVLEPYLIQQGYIMRTPRGRV
VTRHAYLHFGLNIPSRLGEMPVVDEFLDAVDD
Nucleotide
Download Length: 1059 bp
>NTDB_id=154274 A7317_RS23545 WP_024077146.1 5297621..5298679(+) (ruvB) [Pseudomonas fluorescens strain L321]
GTGATTGAAGCTGATCGTCTGATCGCGGCCACGGGCCCCCGTGACCGCGAAGAAATCCAGGACCGTGCCATCCGGCCCCT
GAGCCTGGCCGACTACATCGGCCAGCCTACCGTGCGCGAGCAGATGGAGTTGTTCATCCAGGCCGCGCGCGGGCGCAGCG
AGTCCCTGGATCACACCCTGATCTTTGGCCCGCCGGGGCTGGGTAAAACCACCCTGGCCAACATCATTGCCCAGGAAATG
GGCGTGTCGATCAAGTCGACTTCCGGCCCGGTGCTGGAGCGTCCTGGCGACCTGGCGGCGCTGCTGACCAATCTTGAACC
CCATGACGTATTGTTCATCGACGAAATCCATCGGTTGTCGCCGATTGTCGAGGAAGTGCTGTACCCCGCCATGGAAGACT
TCCAGCTCGACATCATGATCGGCGAAGGCCCCGCGGCCCGATCGATCAAGCTCGACCTGCCGCCGTTCACCCTGGTGGGG
GCGACCACGCGTGCGGGTATGCTGACCAACCCGCTGCGAGACCGTTTCGGTATCGTTCAACGTCTGGAGTTCTATAGCAC
CGCAGACCTGGCGACCATCGTCAGCCGTTCGGCCGGCATTCTCGGCCTGCCCCTGGACCCGGAAGGCGCGTTTGAAATCG
CCCGTCGGGCCCGGGGCACGCCACGTATTGCCAACCGCCTGCTGCGCCGCGTGCGTGATTTTGCCGAGGTGCGGGCCAAG
GGGCATATCACCAAGCCGGTGGCCGACCTGGCCTTGAACCTGCTGGATGTGGACGAGCATGGCTTCGATCACCAGGATCG
ACGTCTACTCTTGACCATGATCGAGAAGTTCGACGGTGGCCCGGTGGGGGTAGACAGCCTGGCCGCGGCCATCAGTGAAG
AGCGCCATACCATTGAAGATGTGCTGGAACCGTACCTGATCCAGCAGGGCTACATCATGCGCACGCCAAGGGGGCGGGTG
GTCACGCGCCATGCCTATTTGCACTTCGGGTTAAACATTCCGTCACGATTGGGTGAGATGCCCGTGGTAGACGAATTCCT
GGATGCAGTGGACGATTAA
GTGATTGAAGCTGATCGTCTGATCGCGGCCACGGGCCCCCGTGACCGCGAAGAAATCCAGGACCGTGCCATCCGGCCCCT
GAGCCTGGCCGACTACATCGGCCAGCCTACCGTGCGCGAGCAGATGGAGTTGTTCATCCAGGCCGCGCGCGGGCGCAGCG
AGTCCCTGGATCACACCCTGATCTTTGGCCCGCCGGGGCTGGGTAAAACCACCCTGGCCAACATCATTGCCCAGGAAATG
GGCGTGTCGATCAAGTCGACTTCCGGCCCGGTGCTGGAGCGTCCTGGCGACCTGGCGGCGCTGCTGACCAATCTTGAACC
CCATGACGTATTGTTCATCGACGAAATCCATCGGTTGTCGCCGATTGTCGAGGAAGTGCTGTACCCCGCCATGGAAGACT
TCCAGCTCGACATCATGATCGGCGAAGGCCCCGCGGCCCGATCGATCAAGCTCGACCTGCCGCCGTTCACCCTGGTGGGG
GCGACCACGCGTGCGGGTATGCTGACCAACCCGCTGCGAGACCGTTTCGGTATCGTTCAACGTCTGGAGTTCTATAGCAC
CGCAGACCTGGCGACCATCGTCAGCCGTTCGGCCGGCATTCTCGGCCTGCCCCTGGACCCGGAAGGCGCGTTTGAAATCG
CCCGTCGGGCCCGGGGCACGCCACGTATTGCCAACCGCCTGCTGCGCCGCGTGCGTGATTTTGCCGAGGTGCGGGCCAAG
GGGCATATCACCAAGCCGGTGGCCGACCTGGCCTTGAACCTGCTGGATGTGGACGAGCATGGCTTCGATCACCAGGATCG
ACGTCTACTCTTGACCATGATCGAGAAGTTCGACGGTGGCCCGGTGGGGGTAGACAGCCTGGCCGCGGCCATCAGTGAAG
AGCGCCATACCATTGAAGATGTGCTGGAACCGTACCTGATCCAGCAGGGCTACATCATGCGCACGCCAAGGGGGCGGGTG
GTCACGCGCCATGCCTATTTGCACTTCGGGTTAAACATTCCGTCACGATTGGGTGAGATGCCCGTGGTAGACGAATTCCT
GGATGCAGTGGACGATTAA
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| ruvB | Bacillus subtilis subsp. subtilis str. 168 |
60.606 |
93.75 |
0.568 |
| ruvB | Streptococcus pneumoniae TIGR4 |
58.75 |
90.909 |
0.534 |
| ruvB | Streptococcus pneumoniae R6 |
58.75 |
90.909 |
0.534 |
| ruvB | Streptococcus pneumoniae D39 |
58.75 |
90.909 |
0.534 |
| ruvB | Synechocystis sp. PCC 6803 |
53.959 |
96.875 |
0.523 |
| ruvB | Helicobacter pylori 26695 |
53.894 |
91.193 |
0.491 |