Detailed information    

insolico Bioinformatically predicted

Overview

Name   dinR/lexA   Type   Regulator
Locus tag   A7317_RS16765 Genome accession   NZ_CP015637
Coordinates   3824538..3825155 (-) Length   205 a.a.
NCBI ID   WP_024075053.1    Uniprot ID   A0ACA7P672
Organism   Pseudomonas fluorescens strain L321     
Function   repressor of recA; repressor of dinR (predicted from homology)   
Homologous recombination

Genomic Context

Location: 3819538..3830155
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  A7317_RS16755 (A7317_16740) - 3822504..3823916 (-) 1413 WP_069076376.1 Y-family DNA polymerase -
  A7317_RS16760 (A7317_16745) imuA 3823924..3824538 (-) 615 WP_069076377.1 translesion DNA synthesis-associated protein ImuA -
  A7317_RS16765 (A7317_16750) dinR/lexA 3824538..3825155 (-) 618 WP_024075053.1 transcriptional repressor LexA Regulator
  A7317_RS16770 (A7317_16755) - 3825561..3826148 (-) 588 WP_024075052.1 NUDIX domain-containing protein -
  A7317_RS16775 (A7317_16760) - 3826386..3827312 (+) 927 WP_024075050.1 alpha/beta hydrolase -
  A7317_RS16780 (A7317_16765) - 3827490..3828665 (-) 1176 WP_024075049.1 alpha-hydroxy acid oxidase -
  A7317_RS16785 (A7317_16770) - 3828787..3829572 (+) 786 WP_069076378.1 DeoR/GlpR family DNA-binding transcription regulator -

Sequence

Protein


Download         Length: 205 a.a.        Molecular weight: 22444.71 Da        Isoelectric Point: 6.8758

>NTDB_id=154251 A7317_RS16765 WP_024075053.1 3824538..3825155(-) (dinR/lexA) [Pseudomonas fluorescens strain L321]
MYSMTNLTPRRTAILTFIRDRIAQQGQPPSLAEIAEAFGFASRSVARKHVVALTEAGFIEVNPNQARGIRLLNQPARPEW
LDVPVLGRVAAGLPIGTDAEVHNRLQLDPATFAKTPDYLLRVQGDSMIEDGILDGDLVGVRRSAEALNGQIVVARLDGEV
TIKRFERHGDHVRLLPRNPAYQPIVVGPDQDLAIEGVFCGLVRQG

Nucleotide


Download         Length: 618 bp        

>NTDB_id=154251 A7317_RS16765 WP_024075053.1 3824538..3825155(-) (dinR/lexA) [Pseudomonas fluorescens strain L321]
ATGTACTCCATGACAAACCTGACCCCCCGCCGTACCGCCATCCTGACCTTCATCCGCGACCGCATCGCGCAGCAAGGCCA
ACCCCCCAGCCTCGCCGAGATCGCCGAGGCGTTTGGCTTCGCCTCCCGCAGCGTCGCACGCAAACATGTGGTGGCCCTGA
CTGAAGCCGGCTTCATCGAGGTCAACCCCAACCAGGCCCGTGGTATTCGCTTGCTCAACCAACCCGCCCGCCCCGAATGG
CTGGACGTCCCCGTTCTCGGTCGAGTCGCTGCAGGCTTGCCCATCGGCACCGATGCCGAAGTCCACAACCGCCTGCAACT
CGACCCTGCCACCTTTGCGAAAACCCCGGATTACCTGCTGCGGGTCCAGGGCGATTCGATGATCGAAGACGGCATCCTCG
ACGGTGACCTGGTCGGCGTGCGCCGCAGTGCCGAAGCGTTGAACGGCCAGATTGTGGTCGCGCGCCTGGACGGTGAAGTC
ACCATCAAACGCTTCGAACGTCACGGCGACCATGTCCGCCTGCTGCCCCGCAACCCGGCGTATCAACCCATCGTGGTAGG
CCCCGACCAGGACCTGGCTATCGAAGGGGTGTTCTGCGGCCTGGTGAGGCAAGGCTGA

Domains

Predicted by InterProScan.

LexA DNA binding domain (LexA_DNA_bind)

(4-68)

Peptidase S24-like (Peptidase_S24)

(84-198)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dinR/lexA Bacillus subtilis subsp. subtilis str. 168

38.164

100

0.385

Multiple sequence alignment