Detailed information    

insolico Bioinformatically predicted

Overview

Name   dinR/lexA   Type   Regulator
Locus tag   A7317_RS07680 Genome accession   NZ_CP015637
Coordinates   1702518..1703126 (+) Length   202 a.a.
NCBI ID   WP_003172575.1    Uniprot ID   A0A7X2V0W1
Organism   Pseudomonas fluorescens strain L321     
Function   repressor of recA; repressor of dinR (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1697518..1708126
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  A7317_RS07665 (A7317_07660) - 1697653..1700346 (+) 2694 WP_024074086.1 DEAD/DEAH box helicase -
  A7317_RS07670 (A7317_07665) nagZ 1700391..1701401 (-) 1011 WP_069075499.1 beta-N-acetylhexosaminidase -
  A7317_RS07675 (A7317_07670) - 1701547..1702254 (-) 708 WP_024074084.1 TetR/AcrR family transcriptional regulator -
  A7317_RS07680 (A7317_07675) dinR/lexA 1702518..1703126 (+) 609 WP_003172575.1 transcriptional repressor LexA Regulator
  A7317_RS07685 (A7317_07680) sulA 1703137..1703610 (+) 474 WP_024074083.1 SOS-induced cell division inhibitor SulA -
  A7317_RS07690 (A7317_07685) - 1703919..1704152 (-) 234 WP_010212068.1 hypothetical protein -
  A7317_RS07695 (A7317_07690) - 1704271..1704792 (-) 522 WP_024074082.1 DUF6586 family protein -
  A7317_RS07700 (A7317_07695) topA 1704998..1707619 (-) 2622 WP_024074081.1 type I DNA topoisomerase -
  A7317_RS07705 (A7317_07700) - 1707734..1707970 (-) 237 WP_010212074.1 DUF1653 domain-containing protein -

Sequence

Protein


Download         Length: 202 a.a.        Molecular weight: 22227.68 Da        Isoelectric Point: 7.3867

>NTDB_id=154231 A7317_RS07680 WP_003172575.1 1702518..1703126(+) (dinR/lexA) [Pseudomonas fluorescens strain L321]
MLKLTPRQAEILAFIKRCLDDNGYPPTRAEIALELGFKSPNAAEEHLKALARKGAIEMTPGASRGIRIPGFEAKADESTL
PIIGRVAAGAPILAQQHVEESCNINPTFFHPRADYLLRVHGMSMKDVGIFDGDLLAVHTTREARNGQIVVARIGDEVTVK
RFKREGSKVWLLAENPEFAPIEVNLKDQDLVIEGLSVGVIRR

Nucleotide


Download         Length: 609 bp        

>NTDB_id=154231 A7317_RS07680 WP_003172575.1 1702518..1703126(+) (dinR/lexA) [Pseudomonas fluorescens strain L321]
ATGCTAAAACTGACGCCACGCCAAGCTGAGATTCTGGCTTTTATCAAGCGCTGCCTCGATGACAACGGCTACCCGCCGAC
GCGAGCGGAGATTGCGCTGGAACTGGGATTCAAATCCCCCAACGCCGCCGAAGAGCATCTCAAGGCCCTTGCTCGCAAGG
GCGCGATCGAGATGACCCCAGGCGCTTCGCGCGGCATTCGCATCCCTGGCTTCGAAGCCAAGGCCGACGAATCGACACTG
CCGATCATCGGTCGCGTCGCCGCCGGTGCGCCGATCCTGGCGCAGCAGCACGTCGAGGAATCCTGCAACATCAACCCGAC
CTTCTTCCATCCTCGCGCCGACTACCTGTTGCGGGTCCATGGCATGAGCATGAAGGACGTGGGCATTTTCGACGGTGACC
TGCTGGCCGTCCACACCACCCGCGAAGCGCGTAACGGCCAGATCGTGGTGGCCCGCATCGGCGATGAAGTCACCGTCAAA
CGCTTCAAGCGCGAAGGCAGCAAGGTCTGGCTGTTAGCCGAGAACCCTGAGTTCGCCCCGATTGAAGTGAACCTGAAAGA
CCAGGACCTGGTGATCGAAGGCCTGAGCGTCGGCGTCATTCGCCGCTAA

Domains

Predicted by InterProScan.

Peptidase S24-like (Peptidase_S24)

(81-194)

LexA DNA binding domain (LexA_DNA_bind)

(1-65)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A7X2V0W1

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dinR/lexA Bacillus subtilis subsp. subtilis str. 168

38.35

100

0.391

Multiple sequence alignment