Detailed information NTG0154228

Bioinformatically predicted

Overview

• Name: rpoS
• Type: Regulator
• Locus tag: A7317_RS06215
• Genome accession: NZ_CP015637
• Coordinates: 1396099..1397103 (-)
• Length: 334 a.a.
• NCBI ID: WP_024073849.1
• Uniprot ID: A0ACA7P2U2
• Organism: Pseudomonas fluorescens strain L321
• Function: regulation of chitinases (predicted from homology) Competence regulation

Genomic Context

Location: 1391099..1402103

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
A7317_RS06190 (A7317_06185)	-	1391286..1393766 (+)	2481	WP_069075386.1	ligase-associated DNA damage response DEXH box helicase	-
A7317_RS06195 (A7317_06190)	pdeM	1393766..1394416 (+)	651	WP_024073851.1	ligase-associated DNA damage response endonuclease PdeM	-
A7317_RS06200 (A7317_06195)	-	1394420..1394617 (-)	198	WP_024073850.1	hypothetical protein	-
A7317_RS06205 (A7317_06200)	dcd	1394725..1395291 (-)	567	WP_003189215.1	dCTP deaminase	-
A7317_RS06210 (A7317_06205)	-	1395680..1395889 (+)	210	WP_002554837.1	cold-shock protein	-
A7317_RS06215 (A7317_06210)	rpoS	1396099..1397103 (-)	1005	WP_024073849.1	RNA polymerase sigma factor RpoS	Regulator
A7317_RS06220 (A7317_06215)	-	1397210..1398046 (-)	837	WP_024073848.1	peptidoglycan DD-metalloendopeptidase family protein	-
A7317_RS06225 (A7317_06220)	-	1398255..1398890 (-)	636	WP_169850588.1	protein-L-isoaspartate(D-aspartate) O-methyltransferase	-
A7317_RS06230 (A7317_06225)	surE	1398932..1399681 (-)	750	WP_024073847.1	5'/3'-nucleotidase SurE	-
A7317_RS06235 (A7317_06230)	truD	1399669..1400727 (-)	1059	WP_069075387.1	tRNA pseudouridine(13) synthase TruD	-
A7317_RS06240 (A7317_06235)	ispF	1400724..1401197 (-)	474	WP_024073845.1	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase	-
A7317_RS06245 (A7317_06240)	fghA	1401252..1402097 (-)	846	WP_069075388.1	S-formylglutathione hydrolase	-

Sequence

Protein

• Length: 334 a.a.
• Molecular weight: 38075.31 Da
• Isoelectric Point: 5.0358

>NTDB_id=154228 A7317_RS06215 WP_024073849.1 1396099..1397103(-) (rpoS) [Pseudomonas fluorescens strain L321]
MALSKEAPEFDIDDEVLLMETGIATESMSNEGPAVPSVRTKSKNSAALKQHKYIDYTRALDATQLYLNEIGFSPLLTPEE
EVHFARLSQKGDPAGRKRMIESNLRLVVKIARRYVNRGLSLLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIE
RAIMNQTRTIRLPIHVVKELNVYLRAARELTQKLDHEPSPEEIANLLEKPVGEVKRMLGLNERVSSVDVSLGPDSDKTLL
DTLTDDRPTDPCELLQDDDLSQSIDQWLSELTDKQREVVIRRFGLRGHESSTLEDVGLEIGLTRERVRQIQVEGLKRLRE
ILEKNGLSSESLFQ

Nucleotide

• Length: 1005 bp

>NTDB_id=154228 A7317_RS06215 WP_024073849.1 1396099..1397103(-) (rpoS) [Pseudomonas fluorescens strain L321]
ATGGCTCTCAGTAAAGAAGCGCCGGAGTTTGACATCGACGATGAGGTTCTCCTTATGGAGACCGGCATCGCTACGGAATC
GATGTCGAATGAGGGACCTGCTGTACCTTCAGTTCGCACCAAATCCAAGAACTCCGCTGCGTTAAAGCAACACAAGTACA
TTGACTACACGCGGGCGCTAGACGCCACCCAGCTGTATCTCAATGAAATCGGCTTTTCCCCTTTGCTGACTCCCGAAGAA
GAAGTCCATTTTGCGCGCTTGTCGCAAAAGGGTGATCCGGCTGGGCGCAAGCGCATGATTGAAAGCAACCTGCGTCTGGT
GGTGAAAATCGCCCGACGCTACGTCAATCGTGGACTGTCCCTGTTGGACCTGATCGAGGAGGGCAACCTGGGCTTGATCC
GGGCCGTGGAGAAGTTCGACCCTGAGCGGGGCTTCCGCTTTTCGACCTACGCCACCTGGTGGATTCGTCAGACCATCGAA
CGGGCGATCATGAATCAGACCCGAACGATCCGGTTGCCGATCCACGTGGTCAAGGAGCTCAACGTCTACCTTCGGGCGGC
GCGTGAGCTCACACAAAAACTCGATCATGAACCTTCACCCGAAGAAATCGCCAACCTGCTGGAGAAGCCGGTAGGGGAGG
TCAAGCGTATGCTCGGACTTAACGAGCGCGTGTCTTCGGTCGATGTCTCGCTGGGTCCGGATTCGGATAAAACCCTGCTG
GATACCCTGACGGATGATCGTCCGACAGATCCTTGCGAACTGTTGCAGGACGATGATCTTTCCCAAAGCATTGACCAGTG
GCTCTCTGAGCTCACGGACAAGCAGCGTGAAGTGGTGATACGTCGCTTCGGCCTGCGTGGTCATGAGAGCAGTACCCTGG
AGGACGTAGGCCTGGAGATCGGCCTGACCCGTGAGCGGGTGCGGCAGATCCAGGTGGAAGGGCTCAAGCGCCTGCGTGAG
ATCCTGGAGAAAAATGGCTTGTCGAGTGAGTCGTTGTTTCAGTAA

Domains

Predicted by InterProScan.

• Sigma-70 region 2 (Sigma70_r2) (99-168)

• Sigma-70 region 3 (Sigma70_r3) (179-253)

• Sigma-70 factor, region 1.2 (Sigma70_r1_2) (61-94)

• Sigma-70, region 4 (Sigma70_r4) (267-320)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rpoS	Vibrio cholerae O1 biovar El Tor strain E7946	66.465	99.102	0.659