Detailed information    

insolico Bioinformatically predicted

Overview

Name   ciaR   Type   Regulator
Locus tag   A7317_RS00835 Genome accession   NZ_CP015637
Coordinates   191713..192078 (+) Length   121 a.a.
NCBI ID   WP_024072747.1    Uniprot ID   A0ACA7NYZ9
Organism   Pseudomonas fluorescens strain L321     
Function   repress competence development (predicted from homology)   
Competence regulation

Genomic Context

Location: 186713..197078
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  A7317_RS00810 (A7317_00805) cysT 187562..188380 (+) 819 WP_024072742.1 sulfate ABC transporter permease subunit CysT -
  A7317_RS00815 (A7317_00810) cysW 188394..189266 (+) 873 WP_024072743.1 sulfate ABC transporter permease subunit CysW -
  A7317_RS00820 (A7317_00815) - 189270..190250 (+) 981 WP_024072744.1 sulfate/molybdate ABC transporter ATP-binding protein -
  A7317_RS00825 (A7317_00820) - 190377..190904 (-) 528 WP_069075005.1 DUF962 domain-containing protein -
  A7317_RS00830 (A7317_00825) - 190988..191674 (+) 687 WP_069075006.1 Crp/Fnr family transcriptional regulator -
  A7317_RS00835 (A7317_00830) ciaR 191713..192078 (+) 366 WP_024072747.1 response regulator Regulator
  A7317_RS00840 (A7317_00835) - 192206..193210 (-) 1005 WP_024072748.1 AraC family transcriptional regulator -
  A7317_RS00845 (A7317_00840) - 193312..194391 (+) 1080 WP_069075007.1 fatty acid desaturase -
  A7317_RS00850 (A7317_00845) - 194363..195973 (-) 1611 WP_069075008.1 arylsulfatase -
  A7317_RS00855 (A7317_00850) - 196003..196818 (-) 816 WP_024072751.1 ABC transporter ATP-binding protein -

Sequence

Protein


Download         Length: 121 a.a.        Molecular weight: 13705.89 Da        Isoelectric Point: 6.4811

>NTDB_id=154207 A7317_RS00835 WP_024072747.1 191713..192078(+) (ciaR) [Pseudomonas fluorescens strain L321]
MRVLLVEHESEEAQRMAQGLNEAGYTVEVAANGMAAQRFVESAEYDLVILDVMLPGLNAWKLQQAIRQKGETPVLFLTTP
GGIEDRLRGLELHEDDYLLKPFAAKALVMRVKKLLRRDRSR

Nucleotide


Download         Length: 366 bp        

>NTDB_id=154207 A7317_RS00835 WP_024072747.1 191713..192078(+) (ciaR) [Pseudomonas fluorescens strain L321]
ATGCGCGTGCTGTTAGTGGAACATGAATCCGAAGAGGCACAGCGGATGGCCCAGGGTTTGAACGAGGCGGGCTACACCGT
GGAAGTCGCGGCCAACGGCATGGCGGCGCAGCGGTTTGTCGAAAGCGCGGAGTACGACCTGGTGATCCTGGATGTCATGC
TGCCGGGCTTGAATGCCTGGAAGTTGCAGCAGGCGATTCGGCAGAAGGGCGAAACGCCGGTGTTGTTCCTGACCACGCCG
GGTGGGATTGAAGATCGCCTGCGCGGGCTGGAATTGCACGAGGATGATTACCTGCTCAAGCCGTTTGCGGCCAAGGCACT
GGTGATGCGGGTCAAGAAACTGTTGCGGCGGGATCGGAGCCGCTGA

Domains

Predicted by InterProScan.

Response regulator receiver domain (Response_reg)

(3-111)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ciaR Streptococcus mutans UA159

37.288

97.521

0.364

Multiple sequence alignment