Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   DE8555_RS09520 Genome accession   NZ_CP012393
Coordinates   1834465..1835961 (-) Length   498 a.a.
NCBI ID   WP_002220355.1    Uniprot ID   A1KVN0
Organism   Neisseria meningitidis strain DE8555     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 1829465..1840961
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DE8555_RS09485 (DE8555_1782) mraZ 1829489..1829944 (-) 456 WP_002218779.1 division/cell wall cluster transcriptional repressor MraZ -
  DE8555_RS09490 (DE8555_1783) - 1830250..1831440 (+) 1191 WP_050584817.1 class I SAM-dependent methyltransferase -
  DE8555_RS09505 (DE8555_1784) - 1832013..1832834 (-) 822 WP_002220359.1 undecaprenyl-diphosphate phosphatase -
  DE8555_RS09510 (DE8555_1785) dsbA1 1832867..1833511 (-) 645 WP_002220358.1 thiol:disulfide interchange protein DsbA/DsbL Machinery gene
  DE8555_RS09515 (DE8555_1786) ftsN 1833514..1834359 (-) 846 WP_002220356.1 cell division protein FtsN -
  DE8555_RS09520 (DE8555_1787) comM 1834465..1835961 (-) 1497 WP_002220355.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  DE8555_RS09525 (DE8555_1788) - 1835975..1836295 (-) 321 WP_002216505.1 accessory factor UbiK family protein -
  DE8555_RS09535 (DE8555_1789) putP 1836778..1838304 (+) 1527 WP_002220352.1 sodium/proline symporter PutP -
  DE8555_RS13945 - 1838394..1838561 (-) 168 WP_009346312.1 hypothetical protein -

Sequence

Protein


Download         Length: 498 a.a.        Molecular weight: 53502.54 Da        Isoelectric Point: 6.7766

>NTDB_id=154180 DE8555_RS09520 WP_002220355.1 1834465..1835961(-) (comM) [Neisseria meningitidis strain DE8555]
MSLALVYSRALSGMNAPLVEVEAHLANGLPHFNIVGLPDTEVKESRDRVRAAIIQSGFEFPAKKITVNLAPADLPKESGR
FDLPIAIGILAASGQVAPEKLAEYEFAGELALSGLLRPVRGALAMAWQGMQAKRAFVLPEENAGQAAVMRGITVYGARSL
GEVAAHLNGIEPLAQTECQVPQMPFEHGGQPDLCDVKGQHTARLALEIAAAGGHSLLMMGPPGTGKSMLSQRLPGILPPL
TEDELVEVWALRSLLPNHQQQLDSNRPFRSPHHSASAAAMVGGGSDPRPGEISLAHHGVLFLDELPEFDRKVLEVLREPL
ENGEIHISRAARQAVYPAKFQLVAAMNPCPCGYLGHPVKPCRCTPESVARYRSKISGPLLDRIDLTIEVPSLSAAELMQQ
EAGESSASVLERVIAARDKQYARQGKVNAALSVSELDSQACIQKEAQEALGGLLEKLSLSARSFHRIMRVARTLADLAGD
EEVGRSHVMKAIGFRRAL

Nucleotide


Download         Length: 1497 bp        

>NTDB_id=154180 DE8555_RS09520 WP_002220355.1 1834465..1835961(-) (comM) [Neisseria meningitidis strain DE8555]
ATGTCGCTTGCCTTGGTTTACAGCCGCGCCTTGAGCGGTATGAATGCGCCGTTGGTCGAAGTGGAAGCCCACCTTGCCAA
CGGTCTGCCGCATTTCAACATCGTCGGGCTGCCCGATACGGAAGTCAAAGAAAGTCGCGACCGCGTCCGTGCCGCCATTA
TTCAAAGCGGTTTTGAATTCCCCGCCAAAAAAATCACCGTCAACCTCGCCCCCGCCGACCTGCCCAAAGAGTCGGGGCGT
TTCGATTTGCCGATTGCAATCGGCATCCTTGCCGCATCGGGGCAGGTTGCGCCCGAAAAACTGGCGGAATACGAGTTTGC
GGGGGAATTGGCACTGTCGGGGCTGTTGCGCCCCGTGCGCGGCGCGTTGGCGATGGCGTGGCAGGGTATGCAGGCAAAAC
GTGCATTTGTTTTGCCTGAAGAAAATGCAGGACAAGCCGCCGTGATGCGCGGCATTACCGTTTACGGCGCGCGCTCTTTG
GGCGAAGTCGCCGCCCATTTGAACGGCATCGAACCTTTGGCGCAAACCGAATGCCAAGTTCCTCAGATGCCGTTTGAACA
TGGCGGACAACCTGATTTGTGCGATGTGAAAGGTCAGCACACCGCGCGCCTTGCTTTGGAAATCGCTGCCGCAGGCGGAC
ACAGCCTCTTGATGATGGGTCCGCCGGGAACGGGCAAGTCTATGCTCTCCCAACGGCTGCCCGGCATCCTGCCGCCGCTG
ACCGAAGACGAATTGGTAGAAGTTTGGGCATTGCGTTCGCTCCTGCCCAACCACCAGCAACAACTCGACAGCAACCGTCC
TTTCCGCAGTCCGCATCACAGCGCCAGCGCGGCGGCTATGGTCGGCGGCGGTTCCGACCCGCGTCCGGGCGAGATTTCAT
TGGCGCACCACGGCGTATTGTTTTTGGACGAGCTGCCCGAGTTCGACCGCAAAGTTTTGGAAGTTTTGCGCGAACCGTTG
GAAAACGGCGAAATCCACATTTCCCGCGCGGCGCGCCAAGCCGTCTATCCTGCCAAATTCCAACTTGTTGCCGCCATGAA
CCCCTGCCCGTGCGGTTATCTCGGGCATCCCGTCAAACCCTGCCGCTGCACGCCCGAAAGCGTCGCGCGTTACCGCAGCA
AGATTTCCGGGCCGCTGCTCGACCGCATCGATTTGACCATCGAAGTCCCCAGCCTGTCCGCCGCCGAACTGATGCAGCAG
GAAGCGGGCGAAAGCAGCGCGTCCGTTTTGGAACGCGTTATCGCCGCCCGCGACAAACAATACGCACGGCAGGGCAAAGT
CAACGCCGCTTTGAGCGTCAGCGAACTCGATTCCCAAGCCTGCATCCAAAAAGAAGCGCAGGAAGCATTGGGCGGCCTGC
TGGAAAAACTCTCCCTTTCCGCCCGCAGCTTCCACCGCATCATGCGCGTGGCGCGTACATTGGCGGATTTGGCTGGCGAC
GAAGAAGTCGGCAGAAGCCACGTCATGAAAGCCATAGGTTTCCGTCGTGCTTTATAG

Domains

Predicted by InterproScan.

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(192-396)

Subunit ChlI of Mg-chelatase (ChlI)

(21-142)

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(403-495)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A1KVN0

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Vibrio cholerae strain A1552

52.988

100

0.534
  comM Vibrio campbellii strain DS40M4

52.314

99.799

0.522
  comM Haemophilus influenzae Rd KW20

49.9

100

0.5
  comM Glaesserella parasuis strain SC1401

49.008

100

0.496
  comM Legionella pneumophila str. Paris

46.535

100

0.472
  comM Legionella pneumophila strain ERS1305867

46.535

100

0.472
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

42.829

100

0.438

Multiple sequence alignment