Detailed information    

insolico Bioinformatically predicted

Overview

Name   recD   Type   Machinery gene
Locus tag   DE8555_RS05945 Genome accession   NZ_CP012393
Coordinates   1106894..1108639 (-) Length   581 a.a.
NCBI ID   WP_063399709.1    Uniprot ID   A0AAC9CNT2
Organism   Neisseria meningitidis strain DE8555     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1101894..1113639
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DE8555_RS05925 (DE8555_1106) - 1102106..1102540 (+) 435 WP_002217157.1 hypothetical protein -
  DE8555_RS05930 (DE8555_1107) - 1102599..1102868 (-) 270 WP_002213508.1 HU family DNA-binding protein -
  DE8555_RS05935 (DE8555_1108) lon 1103050..1105512 (-) 2463 WP_002217155.1 endopeptidase La -
  DE8555_RS12390 - 1105612..1105788 (+) 177 WP_226893060.1 nitric oxide synthase -
  DE8555_RS05940 (DE8555_1109) - 1105763..1106866 (+) 1104 WP_063399707.1 methyltransferase -
  DE8555_RS05945 (DE8555_1110) recD 1106894..1108639 (-) 1746 WP_063399709.1 exodeoxyribonuclease V subunit alpha Machinery gene
  DE8555_RS05950 (DE8555_1111) lolD 1108707..1109402 (-) 696 WP_002220970.1 lipoprotein-releasing ABC transporter ATP-binding protein LolD -
  DE8555_RS05955 (DE8555_1112) - 1109395..1110642 (-) 1248 WP_002248056.1 lipoprotein-releasing ABC transporter permease subunit -
  DE8555_RS05960 (DE8555_1113) - 1110847..1111125 (+) 279 WP_002213502.1 hypothetical protein -
  DE8555_RS05965 (DE8555_1114) recR 1111181..1111798 (-) 618 WP_002217147.1 recombination mediator RecR -
  DE8555_RS05970 (DE8555_1115) - 1111865..1113403 (-) 1539 WP_002220964.1 SurA N-terminal domain-containing protein -

Sequence

Protein


Download         Length: 581 a.a.        Molecular weight: 62980.54 Da        Isoelectric Point: 5.9808

>NTDB_id=154168 DE8555_RS05945 WP_063399709.1 1106894..1108639(-) (recD) [Neisseria meningitidis strain DE8555]
MERQTDEFAQAAARAAIWFLARYAGSGSEVLANCTERLFQALQNGHSFIRLSGGEADALSALAPVVGTSAAPLILEGRRL
FLGRMWQLEYDLAAEIKRLAAADTSAPDAAGARQNLAKWFQGTGSEGQRDAAALALLQSFMVITGGPGTGKTTTVAKLLA
LICGEDENLPNIALAAPTGKAAAHMARALHRAINGFDEPEAVRRHLLKLEGQTVHRLLKLRPPKMQAAFDHIRPLPLDVL
VIDEASMLDTALMLQLLKAVKTGARVILLGDENQLPSVGIGAVLSVLSHKTVLDGETHQRLAGFLPEHGFSVSANPPVLA
QNTTHLSFSHRFGDNSGIGCLARAAVSGDEGAWALFDRFPDELEHSECSPNARVERLYRAHKAYWQAVKDGNIEAAYAGI
SDIVVLAAWRQDAEDFNEAYCSHVRRKMNIPEHQAYFAGEPIMIRQNDYALELFNGDIGLIMEDVGRQGSLAAYFADADG
FKKVAVSCLPDFEPAFAMTVHKSQGSEYREVWLLPPSAAPSDEGDDALSGLSRGLLYTAITRAREKFVFFGGEETFRQAA
ATVKTRQTALGSMLERVFSQE

Nucleotide


Download         Length: 1746 bp        

>NTDB_id=154168 DE8555_RS05945 WP_063399709.1 1106894..1108639(-) (recD) [Neisseria meningitidis strain DE8555]
ATGGAACGGCAGACAGATGAATTTGCCCAAGCGGCGGCAAGGGCGGCAATCTGGTTTTTGGCACGCTATGCGGGTTCAGG
CAGCGAAGTGCTTGCAAACTGCACCGAACGCCTGTTTCAGGCATTGCAAAACGGTCATTCGTTTATCCGTTTGAGCGGTG
GCGAGGCTGACGCGCTGTCGGCACTCGCACCCGTGGTCGGAACATCCGCCGCGCCTTTGATTTTGGAAGGCAGAAGGCTG
TTTTTGGGCAGGATGTGGCAGTTGGAATACGATTTGGCTGCCGAGATAAAACGCTTGGCGGCAGCCGACACGTCCGCCCC
CGACGCGGCAGGCGCGAGGCAAAACCTCGCAAAATGGTTTCAAGGCACGGGCAGCGAAGGGCAGCGCGATGCCGCCGCCT
TGGCACTGTTGCAGTCTTTTATGGTGATTACCGGCGGGCCGGGAACGGGCAAAACGACAACGGTTGCCAAACTGCTGGCG
CTGATTTGCGGTGAAGACGAAAATCTTCCCAACATCGCGCTTGCCGCACCGACGGGCAAAGCGGCGGCACATATGGCGCG
CGCGCTGCACCGTGCAATCAACGGTTTTGACGAGCCGGAGGCCGTCCGCCGCCATTTGCTCAAACTGGAAGGGCAAACCG
TCCACCGACTGCTGAAGCTGCGCCCGCCTAAAATGCAGGCGGCGTTCGACCATATCCGTCCGCTGCCGTTGGACGTATTG
GTTATCGATGAAGCCTCCATGTTGGATACCGCATTGATGTTGCAACTTTTAAAAGCGGTCAAAACCGGCGCGCGCGTGAT
TCTGCTGGGGGATGAAAACCAGCTCCCGTCCGTCGGAATCGGGGCGGTGCTGTCCGTTTTGTCGCACAAAACCGTTTTGG
ACGGAGAAACGCACCAAAGGCTGGCCGGCTTCCTTCCGGAACACGGTTTCAGCGTCAGCGCAAATCCGCCCGTGTTGGCG
CAAAACACCACCCATCTGTCGTTCAGCCACCGCTTCGGCGACAACAGTGGCATCGGCTGCCTTGCCCGTGCCGCCGTATC
GGGCGATGAGGGGGCGTGGGCATTGTTTGACCGGTTTCCGGACGAACTGGAACATTCGGAATGCAGTCCGAACGCTCGAG
TCGAAAGGTTGTACCGGGCGCACAAAGCCTATTGGCAGGCGGTAAAAGACGGCAATATCGAAGCCGCATACGCAGGCATC
TCGGATATCGTGGTCCTGGCAGCTTGGCGGCAGGATGCGGAAGACTTCAACGAAGCCTATTGCAGCCATGTACGCCGCAA
AATGAACATACCGGAACATCAGGCCTATTTCGCCGGAGAACCGATTATGATCAGACAGAACGACTACGCGCTTGAACTGT
TCAACGGCGACATCGGATTGATTATGGAAGATGTCGGACGGCAGGGCAGCCTTGCCGCCTATTTTGCCGATGCGGACGGA
TTTAAAAAGGTAGCGGTAAGCTGCCTGCCCGATTTCGAACCCGCATTCGCCATGACCGTCCACAAAAGCCAAGGTTCGGA
ATATCGGGAAGTCTGGCTGCTGCCGCCTTCCGCCGCACCTTCGGACGAAGGGGACGACGCGCTTTCGGGCTTGAGCAGAG
GGCTGCTTTACACAGCCATTACCCGCGCGAGGGAAAAGTTCGTATTCTTCGGCGGAGAAGAAACCTTCCGGCAAGCTGCC
GCCACTGTCAAAACGCGTCAGACGGCATTGGGCAGTATGCTCGAGCGGGTATTTTCACAAGAATAA

Domains

Predicted by InterproScan.

UvrD-like helicase C-terminal domain (UvrD_C_2)

(494-548)

AAA domain (AAA_30)

(125-289)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recD Neisseria gonorrhoeae strain FA1090

94.836

100

0.948

Multiple sequence alignment