Detailed information    

insolico Bioinformatically predicted

Overview

Name   mutX   Type   Machinery gene
Locus tag   A6M16_RS03995 Genome accession   NZ_CP015557
Coordinates   794173..794655 (-) Length   160 a.a.
NCBI ID   WP_029751837.1    Uniprot ID   -
Organism   Streptococcus suis strain DN13     
Function   DNA mismatch repair (predicted from homology)   
Homologous recombination

Genomic Context

Location: 789173..799655
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  A6M16_RS03970 (A6M16_03975) pheT 789329..791728 (+) 2400 WP_063725208.1 phenylalanine--tRNA ligase subunit beta -
  A6M16_RS03975 (A6M16_03980) - 791928..792101 (+) 174 Protein_729 DUF2087 domain-containing protein -
  A6M16_RS03980 (A6M16_03985) - 792227..792529 (-) 303 WP_029751840.1 hypothetical protein -
  A6M16_RS03985 (A6M16_03990) - 792722..793465 (+) 744 WP_029751838.1 polyphosphate polymerase domain-containing protein -
  A6M16_RS03990 (A6M16_03995) - 793452..794129 (+) 678 WP_024407416.1 DUF4956 domain-containing protein -
  A6M16_RS03995 (A6M16_04000) mutX 794173..794655 (-) 483 WP_029751837.1 NUDIX hydrolase Machinery gene
  A6M16_RS04000 (A6M16_04005) folE 794822..795385 (+) 564 WP_002938082.1 GTP cyclohydrolase I FolE -
  A6M16_RS04005 (A6M16_04010) folP 795394..796206 (+) 813 WP_029751836.1 dihydropteroate synthase -
  A6M16_RS04010 (A6M16_04015) folB 796199..796561 (+) 363 WP_012027113.1 dihydroneopterin aldolase -
  A6M16_RS04015 (A6M16_04020) folK 796558..797046 (+) 489 WP_024395904.1 2-amino-4-hydroxy-6- hydroxymethyldihydropteridine diphosphokinase -
  A6M16_RS04020 (A6M16_04025) - 797097..798407 (+) 1311 WP_029751835.1 GntP family permease -

Sequence

Protein


Download         Length: 160 a.a.        Molecular weight: 18499.79 Da        Isoelectric Point: 4.4175

>NTDB_id=154159 A6M16_RS03995 WP_029751837.1 794173..794655(-) (mutX) [Streptococcus suis strain DN13]
MTKKPVQLATICYIDNGKEFLLLHRNKKENDVHQGKWIGVGGKLEPGETPQACAIREVFEETGLTVTKHALKGVITFPDF
TPNTDWYTYVFKITGFEGSLIDCNEGDLEWVPYDQVLSKPTWEGDRHFQEWLLEDKPFFSACFRYDGDSLLDYSVDFYEE

Nucleotide


Download         Length: 483 bp        

>NTDB_id=154159 A6M16_RS03995 WP_029751837.1 794173..794655(-) (mutX) [Streptococcus suis strain DN13]
ATGACCAAGAAACCCGTCCAACTCGCTACGATTTGCTACATTGATAATGGCAAGGAATTTCTTCTCCTTCATCGAAACAA
GAAAGAAAACGATGTCCATCAAGGAAAATGGATTGGAGTTGGTGGTAAACTAGAACCTGGCGAAACACCACAGGCTTGTG
CCATTCGAGAAGTCTTTGAGGAAACTGGGCTTACTGTAACAAAGCATGCTCTAAAAGGAGTGATAACCTTCCCAGACTTT
ACTCCAAACACAGACTGGTACACCTATGTCTTTAAGATAACTGGTTTTGAAGGAAGTTTGATCGATTGCAACGAAGGCGA
TTTAGAATGGGTTCCTTATGACCAAGTGCTCTCCAAACCAACTTGGGAAGGCGACCGGCATTTTCAAGAATGGCTATTAG
AGGACAAACCATTTTTTTCCGCTTGCTTCCGCTATGACGGGGATAGCTTGCTGGATTACAGCGTTGATTTTTATGAGGAA
TAA

Domains

Predicted by InterProScan.

NUDIX domain (NUDIX)

(8-132)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  mutX Streptococcus pneumoniae R6

80.392

95.625

0.769

Multiple sequence alignment