Detailed information NTG0154140

Bioinformatically predicted

Overview

• Name: clpC
• Type: Regulator
• Locus tag: A6M16_RS02005
• Genome accession: NZ_CP015557
• Coordinates: 376765..378864 (+)
• Length: 699 a.a.
• NCBI ID: WP_024395780.1
• Uniprot ID: -
• Organism: Streptococcus suis strain DN13
• Function: degradation of ComX (predicted from homology) Competence regulation

Genomic Context

Location: 371765..383864

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
A6M16_RS01980 (A6M16_01980)	-	372182..372928 (+)	747	WP_014637498.1	class I SAM-dependent DNA methyltransferase	-
A6M16_RS01985 (A6M16_01985)	-	372925..374013 (+)	1089	WP_024395784.1	nucleotidyltransferase	-
A6M16_RS01990 (A6M16_01990)	-	374027..374395 (+)	369	WP_228381308.1	TipAS antibiotic-recognition domain-containing protein	-
A6M16_RS11135	-	374454..376064 (+)	1611	WP_229020548.1	P-loop NTPase fold protein	-
A6M16_RS02000 (A6M16_02000)	-	376061..376474 (+)	414	WP_063725166.1	peptide deformylase	-
A6M16_RS02005 (A6M16_02005)	clpC	376765..378864 (+)	2100	WP_024395780.1	ATP-dependent Clp protease ATP-binding subunit	Regulator
A6M16_RS02010 (A6M16_02010)	malQ	379046..380554 (+)	1509	WP_063725167.1	4-alpha-glucanotransferase	-
A6M16_RS02015 (A6M16_02015)	glgP	380547..382811 (+)	2265	WP_024395779.1	glycogen/starch/alpha-glucan family phosphorylase	-
A6M16_RS02020 (A6M16_02020)	-	383041..383748 (-)	708	WP_004194205.1	UTRA domain-containing protein	-

Sequence

Protein

• Length: 699 a.a.
• Molecular weight: 77320.23 Da
• Isoelectric Point: 4.8594

>NTDB_id=154140 A6M16_RS02005 WP_024395780.1 376765..378864(+) (clpC) [Streptococcus suis strain DN13]
MNNNFNNFNNMDDIFNQLMGNMGGYSTERRRYSINGREVTPEEFAMYRQTGRLPQTEEVVQTQVKGQIKSDGILAKLGRN
LTQDAREGKLDPVIGRNKEIQETSEILARRTKNNPVLVGDAGVGKTAVVEGLAQAIVNGDVPAAIKNKEIISIDISGLEA
GTQYRGAFEENVQNLVDEVKKAGNIILFFDEIHQILGAGSTGGDSGSKGLADILKPALSRGELTVIGATTQDEYRNTIHK
NAALARRFNEVKVNAPSAEDTYQILKGIKPLYEAHHNIELPDEVLRAAVDYSVQYIPQRSLPDKAIDLIDVTAAHLAAQH
PVTDIQTLEAEMAEAKQLQLEAAEKEDYEKALNEKVRIDKLQKQIDNHTEQQKVVATVNDVAQAVERMTGIPVSQMGASD
IERLKELKNRLAANVIGQDDAVEAVSRAIRRNRAGFDDGNRPIGSFLFVGPTGVGKTELAKQLALDLFGNKAAIIRLDMS
EYSDRTAVSKLIGTTAGYVGYDDNSHTLTERVRRNPYSIVLLDEIEKADPQVITLLLQVLDDGHLTDGQGNQVNFKNTII
IATSNAGFGYGMAEGEENQDIMDRIAPYFRPEFLNRFNAVIEFKHLDKDDLKAIVELLLAQVNNTLAKKGIQLTVTEAAK
EFLMEEGYDKAMGARPLRRVIENQIRDKVTDYYLDHVDVKYLEADVVDGSIQIKEQSFA

Nucleotide

• Length: 2100 bp

>NTDB_id=154140 A6M16_RS02005 WP_024395780.1 376765..378864(+) (clpC) [Streptococcus suis strain DN13]
ATGAACAACAATTTCAATAATTTTAACAATATGGACGATATTTTCAATCAACTCATGGGCAACATGGGTGGCTACAGCAC
AGAACGTCGCCGTTATTCTATCAATGGACGTGAAGTGACACCAGAAGAATTTGCTATGTACCGTCAGACTGGTCGCCTGC
CACAGACAGAAGAAGTGGTTCAAACACAGGTCAAAGGTCAGATAAAGTCAGACGGAATTCTTGCAAAACTTGGTCGCAAT
TTGACACAAGATGCGCGTGAAGGTAAGTTGGATCCAGTCATTGGACGAAACAAGGAAATCCAAGAAACCTCTGAAATCCT
AGCTCGCCGTACGAAAAATAATCCTGTTTTGGTCGGTGATGCTGGTGTTGGTAAAACTGCGGTAGTAGAAGGATTGGCTC
AAGCCATTGTCAATGGTGATGTGCCAGCAGCCATTAAGAACAAGGAAATCATCTCCATCGACATTTCAGGCTTGGAAGCT
GGGACTCAGTATCGTGGAGCTTTTGAGGAAAATGTGCAAAATCTTGTGGATGAAGTCAAAAAAGCTGGAAATATCATTCT
CTTCTTTGATGAAATTCATCAGATTTTGGGAGCCGGTAGCACTGGCGGAGACTCAGGTTCCAAGGGTTTAGCGGATATTC
TCAAACCAGCTTTATCCCGTGGGGAATTGACGGTTATCGGTGCCACTACGCAGGACGAATACCGCAATACTATTCACAAG
AACGCCGCTCTGGCTCGTCGTTTCAATGAAGTCAAGGTCAATGCTCCGTCCGCAGAGGACACCTACCAGATTTTGAAAGG
GATTAAGCCGCTTTATGAAGCCCACCACAATATTGAATTGCCAGATGAGGTTTTGAGAGCTGCGGTTGATTATTCCGTCC
AATATATTCCACAACGTAGCTTGCCTGATAAGGCTATTGACCTGATCGATGTGACCGCTGCACACTTGGCTGCACAACAT
CCTGTGACAGATATTCAGACCTTAGAAGCAGAAATGGCTGAGGCAAAACAGTTGCAGTTGGAAGCAGCTGAAAAAGAGGA
TTATGAAAAAGCCTTGAATGAAAAAGTCCGTATTGATAAGCTACAAAAACAGATTGATAATCATACGGAGCAACAGAAAG
TGGTGGCGACTGTTAATGATGTGGCTCAGGCGGTTGAGCGGATGACAGGAATTCCAGTCTCTCAAATGGGAGCTTCTGAT
ATTGAACGACTCAAGGAATTGAAAAATCGTCTGGCAGCTAACGTTATCGGTCAAGACGATGCGGTGGAAGCTGTATCTCG
TGCCATTCGTCGGAATCGTGCAGGTTTTGATGACGGAAACCGTCCGATTGGTTCCTTCCTCTTTGTCGGTCCGACAGGTG
TAGGTAAGACTGAGTTGGCAAAACAGTTAGCGCTAGACTTGTTTGGTAACAAGGCTGCCATTATTCGCCTGGATATGTCT
GAATACAGCGATCGGACAGCCGTTTCCAAATTAATCGGTACCACAGCTGGTTATGTTGGTTATGATGACAATTCCCATAC
TCTCACCGAACGTGTCCGCCGCAATCCTTACTCCATTGTCCTCTTGGATGAGATTGAAAAGGCAGATCCGCAAGTGATTA
CCCTTCTCTTGCAAGTGCTAGATGATGGTCATTTGACTGATGGACAGGGCAACCAAGTTAACTTTAAGAATACCATTATC
ATCGCTACATCTAATGCAGGTTTTGGTTATGGAATGGCAGAAGGTGAAGAAAATCAAGACATCATGGACCGCATCGCACC
ATACTTCCGTCCAGAATTTCTCAACCGTTTCAACGCAGTTATCGAATTCAAGCACTTGGATAAAGATGATCTCAAAGCCA
TTGTAGAATTACTCTTGGCCCAGGTCAATAATACCCTGGCGAAGAAAGGCATCCAATTAACGGTAACGGAAGCTGCCAAA
GAATTCTTGATGGAAGAAGGCTATGACAAGGCCATGGGAGCTCGTCCTCTGCGCCGAGTGATTGAAAATCAGATTCGAGA
CAAGGTAACAGATTACTATTTGGATCATGTTGATGTCAAATATCTGGAAGCGGATGTGGTTGATGGAAGCATCCAAATAA
AAGAGCAAAGCTTTGCTTAA

Domains

Predicted by InterProScan.

• AAA lid domain (AAA_lid_9) (257-351)

• AAA domain (Cdc48 subfamily) (AAA_2) (441-599)

• ATPase family associated with various cellular activities (AAA) (AAA) (116-249)

• C-terminal, D2-small domain, of ClpB protein (ClpB_D2-small) (606-676)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
clpC	Lactococcus lactis subsp. cremoris KW2	47.376	100	0.478
clpE	Streptococcus mutans UA159	49.921	90.844	0.454
clpE	Streptococcus pneumoniae Rx1	49.842	90.415	0.451
clpE	Streptococcus pneumoniae D39	49.842	90.415	0.451
clpE	Streptococcus pneumoniae R6	49.842	90.415	0.451
clpE	Streptococcus pneumoniae TIGR4	49.842	90.415	0.451
clpC	Bacillus subtilis subsp. subtilis str. 168	44.892	92.418	0.415
clpC	Streptococcus pneumoniae Rx1	41.766	95.565	0.399
clpC	Streptococcus pneumoniae D39	41.766	95.565	0.399
clpC	Streptococcus pneumoniae TIGR4	41.529	95.422	0.396
clpC	Lactococcus lactis subsp. lactis strain DGCC12653	41.248	93.991	0.388
clpC	Streptococcus mutans UA159	43.528	88.412	0.385
clpC	Streptococcus thermophilus LMD-9	42.88	89.413	0.383
clpC	Streptococcus thermophilus LMG 18311	42.72	89.413	0.382