Detailed information    

insolico Bioinformatically predicted

Overview

Name   treR   Type   Regulator
Locus tag   A6M16_RS01170 Genome accession   NZ_CP015557
Coordinates   207480..208193 (+) Length   237 a.a.
NCBI ID   WP_012774930.1    Uniprot ID   A0A0H3MT72
Organism   Streptococcus suis strain DN13     
Function   regulate expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 202480..213193
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  A6M16_RS01155 (A6M16_01155) treC 203291..204916 (-) 1626 WP_063725153.1 alpha,alpha-phosphotrehalase -
  A6M16_RS01160 (A6M16_01160) - 205137..205535 (+) 399 WP_024395184.1 hypothetical protein -
  A6M16_RS01165 (A6M16_01165) treP 205771..207246 (-) 1476 Protein_191 PTS system trehalose-specific EIIBC component -
  A6M16_RS01170 (A6M16_01170) treR 207480..208193 (+) 714 WP_012774930.1 trehalose operon repressor Regulator
  A6M16_RS01175 (A6M16_01175) - 208251..208562 (+) 312 WP_002935948.1 hypothetical protein -
  A6M16_RS01180 (A6M16_01180) - 208559..209107 (+) 549 WP_002935945.1 CvpA family protein -
  A6M16_RS01185 (A6M16_01185) mutS/mutS2 209657..211990 (+) 2334 WP_029752765.1 endonuclease MutS2 Machinery gene
  A6M16_RS01190 (A6M16_01190) - 212156..212536 (+) 381 WP_024389717.1 DUF1310 family protein -

Sequence

Protein


Download         Length: 237 a.a.        Molecular weight: 27200.07 Da        Isoelectric Point: 6.7422

>NTDB_id=154136 A6M16_RS01170 WP_012774930.1 207480..208193(+) (treR) [Streptococcus suis strain DN13]
MKKYQEIYNDLKEKIRTNVYPAESSLPTEQQLQEIYGVSRDTVRKALAILTEGGLIQKVQGRGSMVLKQEILNFPVSGLT
SYQELTNVLQLSTKTDVVSLDMITVNSSLSHLTGFEPYSKVWKVVRTRSIDGKVSVVDTDYLAVDVVPELTTAIAEKSIY
EYLENKLGLDIAYAQKEITVEPTNREERELMQSKDDYLVLIKSRVYLGDTQQFQYTESKHKIDKFRFVDFARRKHSL

Nucleotide


Download         Length: 714 bp        

>NTDB_id=154136 A6M16_RS01170 WP_012774930.1 207480..208193(+) (treR) [Streptococcus suis strain DN13]
ATGAAAAAATACCAAGAAATTTATAATGACTTAAAAGAAAAAATACGGACAAATGTTTATCCGGCAGAAAGCTCCCTACC
GACAGAACAGCAGCTTCAGGAAATCTATGGTGTTAGTCGTGATACGGTTCGTAAGGCGTTGGCGATTTTGACTGAGGGAG
GTTTGATTCAAAAAGTGCAAGGGCGTGGTTCAATGGTCCTTAAGCAAGAAATTCTCAATTTCCCAGTTTCAGGTTTAACT
TCCTATCAGGAATTAACAAATGTTCTCCAGCTTTCTACCAAGACAGATGTTGTCAGCTTAGATATGATTACCGTTAATAG
TAGCCTTTCGCACTTGACAGGCTTTGAGCCGTATAGCAAGGTGTGGAAAGTTGTCCGTACACGTTCAATTGACGGTAAGG
TCTCCGTTGTGGATACAGATTATCTTGCTGTCGATGTCGTGCCAGAGTTGACAACTGCTATTGCTGAAAAATCCATCTAT
GAATACCTAGAAAATAAGTTAGGCCTTGATATTGCTTATGCACAAAAAGAGATTACGGTAGAGCCGACCAATCGAGAAGA
GCGCGAGCTAATGCAATCGAAGGATGATTATTTGGTCTTGATTAAATCTCGTGTCTATCTCGGTGATACCCAGCAATTCC
AATATACAGAAAGCAAGCATAAAATTGATAAATTCCGCTTTGTAGATTTTGCTCGTAGAAAGCATTCTTTATAG

Domains

Predicted by InterProScan.

Bacterial regulatory proteins, gntR family (GntR)

(3-66)

UTRA domain (UTRA)

(91-226)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0H3MT72

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  treR Streptococcus mutans UA159

52.137

98.734

0.515

Multiple sequence alignment