Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   AKO64_RS05335 Genome accession   NZ_CP012380
Coordinates   1076460..1077089 (+) Length   209 a.a.
NCBI ID   WP_000839153.1    Uniprot ID   A0A9Q6Y251
Organism   Escherichia coli strain WAT     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 1071460..1082089
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AKO64_RS05310 (AKO64_1001) ycbZ 1071850..1073610 (-) 1761 WP_000156526.1 Lon protease family protein -
  AKO64_RS05315 (AKO64_1002) matP 1073796..1074248 (+) 453 WP_000877158.1 macrodomain Ter protein MatP -
  AKO64_RS05320 (AKO64_1003) ompA 1074323..1075375 (-) 1053 WP_000750419.1 porin OmpA -
  AKO64_RS05330 (AKO64_1005) sulA 1075732..1076241 (-) 510 WP_000288710.1 SOS-induced cell division inhibitor SulA -
  AKO64_RS05335 (AKO64_1006) sxy/tfoX 1076460..1077089 (+) 630 WP_000839153.1 CRP-S regulon transcriptional coactivator Sxy Regulator
  AKO64_RS05340 (AKO64_1007) yccS 1077052..1079214 (-) 2163 WP_000875044.1 YccS family putative transporter -
  AKO64_RS05345 (AKO64_1008) yccF 1079224..1079670 (-) 447 WP_001261235.1 YccF domain-containing protein -
  AKO64_RS05350 (AKO64_1009) helD 1079793..1081847 (+) 2055 WP_001315388.1 DNA helicase IV -

Sequence

Protein


Download         Length: 209 a.a.        Molecular weight: 24147.02 Da        Isoelectric Point: 9.2180

>NTDB_id=153999 AKO64_RS05335 WP_000839153.1 1076460..1077089(+) (sxy/tfoX) [Escherichia coli strain WAT]
MKSLSYKRIYKSQEYLATLGTIEYRSLFGSYSLTVDDTVFAMVSDGELYLRACEQSAQYCVKHPPVWLTYKKCGRSVTLN
YYRVDESLWRNQLKLVRLSKYSLDAALKEKSTRNTRERLKDLPNMSFHLEAILGEVGIKDVRALRILGAKMCWLRLRQQN
SLVTEKILFMLEGAIIGIHEAALPVARRQELAEWADSLTPKQEFPAELE

Nucleotide


Download         Length: 630 bp        

>NTDB_id=153999 AKO64_RS05335 WP_000839153.1 1076460..1077089(+) (sxy/tfoX) [Escherichia coli strain WAT]
ATGAAAAGCCTCTCCTATAAGCGGATCTATAAATCACAAGAATACCTGGCAACGTTGGGCACAATTGAATACCGATCATT
GTTTGGCAGTTACAGCCTGACCGTTGACGACACGGTGTTTGCGATGGTTTCTGATGGTGAGTTGTATCTTCGGGCTTGTG
AGCAAAGTGCACAGTACTGTGTAAAACATCCGCCTGTCTGGCTGACATATAAAAAGTGTGGCCGATCCGTTACCCTCAAT
TACTATCGGGTTGATGAAAGTCTATGGCGAAATCAACTGAAGCTGGTGCGTCTGTCGAAATATTCTCTCGATGCAGCGCT
GAAAGAGAAAAGCACGCGCAATACCCGGGAAAGACTGAAAGATTTGCCCAATATGTCTTTTCATCTGGAAGCGATTCTCG
GGGAGGTGGGGATTAAGGATGTACGGGCGTTACGTATACTTGGGGCAAAAATGTGTTGGTTGCGACTGCGGCAGCAAAAC
AGTCTGGTGACAGAAAAGATTCTGTTTATGCTTGAAGGTGCCATTATCGGCATTCATGAAGCTGCGCTCCCGGTGGCACG
CCGCCAGGAGCTTGCAGAATGGGCTGACTCTCTTACGCCGAAACAGGAGTTTCCTGCGGAACTTGAGTAA

Domains

Predicted by InterproScan.

TfoX N-terminal domain (TfoX_N)

(14-106)

TfoX C-terminal domain (TfoX_C)

(116-194)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

100

100

1

Multiple sequence alignment